CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:7..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBP8_PICGU (ATP-dependent RNA helicase DBP8 OS=Pichia guilliermondii GN=DBP8 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 41/105 (39.05%), Postives = 55/105 (52.38%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 579
            F+D  +   LL A+       P+ +Q ECIPQ + G D I  AK+G GKT  F    + +   +P  +  LVL  TRELA QI  +F      + +IKVAV  GG
Sbjct:    3 FKDLGVSKWLLEALAAMKIRSPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKWSEDPFGIYGLVLTPTRELALQIAEQFLALGASM-NIKVAVVVGG 106          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_MAGGR (ATP-dependent rRNA helicase RRP3 OS=Magnaporthe grisea GN=RRP3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 47/128 (36.72%), Postives = 64/128 (50.00%), Query Frame = 1
Query:  223 EAAKKGYVGIHSS------GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588
            EA K+G   + S        FRD  +   L  A     F+ P+ +Q + IP A+ G DVI  A++G GKTA F L  LQ     P  +  LVL  TRELA QI   FE     +  ++ AV  GG+++
Sbjct:   92 EATKEGQTELPSKEETPTKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKPQPLFGLVLAPTRELAAQIGQTFEALGASI-SLRCAVVVGGLDM 218          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RHLB_PECCP (ATP-dependent RNA helicase rhlB OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 43/124 (34.68%), Postives = 64/124 (51.61%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ-------QTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 615
            F DF L P+++ A+   GF + + +Q   +P A+ G DV  QA++G GKT  F+ ST           E    Q  AL++  TRELA QI  + E  S +L  +K+ + YGG        +L+N
Sbjct:   11 FSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALS-HLTGLKLGLAYGGDGYDKQLKVLEN 133          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 46/125 (36.80%), Postives = 58/125 (46.40%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK--VAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  L   LLR I   GFE PS +Q   I     G D+I QA+SG GKT  F +  LQ+ +     +  LVL  TRELA Q      R   +L +       F GG   ++  DL K +   IV
Sbjct:   28 FDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGT--RVQDDLRKLQAGVIV 150          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 46/125 (36.80%), Postives = 58/125 (46.40%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK--VAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  L   LLR I   GFE PS +Q   I     G D+I QA+SG GKT  F +  LQ+ +     +  LVL  TRELA Q      R   +L +       F GG   ++  DL K +   IV
Sbjct:   28 FDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGT--RVQDDLRKLQAGVIV 150          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 43/107 (40.19%), Postives = 56/107 (52.34%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 585
            F D  L  +LLR +   GF  PS +Q   I   I G DV+ QA+SG GKT  F ++ LQ+ +P      AL+L  TRELA QI         ++ DIKV    GG +
Sbjct:   25 FDDMNLNEKLLRGVFGYGFNKPSAIQQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAALQRIDPAIKAPQALMLAPTRELALQIQKVVMALGFHM-DIKVHACIGGTS 130          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_NEUCR (ATP-dependent RNA helicase drs-1 OS=Neurospora crassa GN=drs-1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 46/146 (31.51%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  184 AQAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV---TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            A+  +  A +   +  KKG +    S F++  L   +LR +   GF  P+ +Q + IP +++G DV+  A +G GKTA FV+  L++    P +V     ++L  TRELA Q CH          DIK  +  GG+++K+ +  L+
Sbjct:  272 AKMKEFFAPEEENQPKKKGEM----SSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQ-CHAVAVKLASHTDIKFCLAVGGLSLKVQEAELR 412          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_MAGGR (ATP-dependent RNA helicase DRS1 OS=Magnaporthe grisea GN=DRS1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 41/122 (33.61%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV---TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            ++ F+   L   +LR +   GF  P+ +Q + IP A++G DV+  A +G GKTA FV+  L++    P +V     ++L  TRELA Q CH          DIK  +  GG+++K+ +  L+
Sbjct:  254 NASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILAPTRELAIQ-CHAVATKLASHTDIKFCLAVGGLSLKVQESELR 374          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_CHAGB (ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 43/121 (35.54%), Postives = 65/121 (53.72%), Query Frame = 1
Query:  259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV---TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            S F+   L   +LR +   GF  P+ +Q + IP A++G DV+  A +G GKTA FV+  L++    P +V     +VL  TRELA Q CH          DIK  +  GG+++K+ +  L+
Sbjct:  276 SSFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVVLTPTRELAIQ-CHSVATKLASHTDIKFCLAVGGLSLKVQEGELR 395          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX42_DICDI (Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum GN=ddx42 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 47/120 (39.17%), Postives = 64/120 (53.33%), Query Frame = 1
Query:  292 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            LL+AI     E P+ +Q + IP A+ G D+I  AK+G GKTA F+  ++      P      G + AL L  TRELA+QI  E  ++S Y   +K  V YGGV+ +     LK  C  IV
Sbjct:  316 LLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPI-ALFLAPTRELAHQIYLETLKYSKYF-KLKTTVLYGGVSKQQQCKELKAGCEIIV 433          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DBP8_PICGU1.841e-1139.05ATP-dependent RNA helicase DBP8 OS=Pichia guillier... [more]
RRP3_MAGGR2.405e-1136.72ATP-dependent rRNA helicase RRP3 OS=Magnaporthe gr... [more]
RHLB_PECCP2.405e-1134.68ATP-dependent RNA helicase rhlB OS=Pectobacterium ... [more]
IF4A_LEIMA2.405e-1136.80Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIIN2.405e-1136.80Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_CANGA2.405e-1140.19ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]
DRS1_NEUCR2.405e-1131.51ATP-dependent RNA helicase drs-1 OS=Neurospora cra... [more]
DRS1_MAGGR2.405e-1133.61ATP-dependent RNA helicase DRS1 OS=Magnaporthe gri... [more]
DRS1_CHAGB2.405e-1135.54ATP-dependent RNA helicase DRS1 OS=Chaetomium glob... [more]
DDX42_DICDI2.405e-1139.17Probable ATP-dependent RNA helicase ddx42 OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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