CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:7..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 510
            + F +  +K +LLR +   GFE PS +Q   +   I G DVI QA+SG GKT++  L+  Q  +    +V AL+L  TRELA Q
Sbjct:   18 ASFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQ 101          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_GIBZE (ATP-dependent RNA helicase DRS1 OS=Gibberella zeae GN=DRS1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV---TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            +S F+   L   ++R +   GF  P+ +Q + IP A++G DV+  A++G GKT  F+L  L++    P ++     +VL  TRELA Q CH          DIK  +  GG+++K  +  LK
Sbjct:  255 ASSFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPILERLLYRPKKIPTTRVVVLLPTRELAIQ-CHAVATKLAAFTDIKFTLAVGGLSLKAQELELK 375          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_BOTFB (ATP-dependent RNA helicase drs1 OS=Botryotinia fuckeliana (strain B05.10) GN=drs1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV---TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            F+   L   +LR +   GF  P+ +Q + IP A+LG DV+  A +G GKTA FV+  L++    P +V      +L  TRELA Q CH          DIK  +  GG+++K+ +  L+
Sbjct:  270 FQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLERLLYRPKKVPTSRVAILMPTRELAIQ-CHAVATKLASHTDIKFCLAVGGLSLKVQEAELR 387          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX49_DICDI (Probable ATP-dependent RNA helicase ddx49 OS=Dictyostelium discoideum GN=ddx49 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  316 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            GF+ PS +Q   IP+ + G D+I  AK+G GKTA F +  L Q   +P  V A++L  TRELA QI  +F      + ++  +V  GG++  + + L+ ++ P I+
Sbjct:   23 GFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPM-NVNCSVVIGGID-NVTQALILDKRPHII 126          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX20_DANRE (Probable ATP-dependent RNA helicase DDX20 OS=Danio rerio GN=ddx20 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 43/116 (37.07%), Postives = 55/116 (47.41%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612
            F   LL   +L  +  SGF+ PS +Q + IP    G+D+I QAKSG GKT VF    L            LVL  TRE+A QI        + +  ++  VF GG  I   K  LK
Sbjct:   28 FSSLLLSKPVLEGLSASGFQRPSPIQLKAIPLGRCGLDLIVQAKSGTGKTCVFTTIALDSLILENATTQVLVLAPTREIAVQIHAVVMAIGSAMEGLECHVFIGGRPISQDKQHLK 143          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RHLB_PSEPK (ATP-dependent RNA helicase rhlB OS=Pseudomonas putida (strain KT2440) GN=rhlB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI-KIHKDLLKNECPPIV 633
            F DF L  EL+ AI D GF + + +Q + +   + G D I +A++G GKTA F++S + Q +  P       G+  AL++  TREL  QI  +    + Y   + V  F GG++  K  K L    C  +V
Sbjct:   11 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKY-TGLNVMSFVGGMDFDKQLKALEARHCDILV 140          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_COCIM (ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 41/129 (31.78%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  256 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV---TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            +S F++F L   +LR +   GF  P+ +Q + IP  +LG D++  A +G GKTA F++  L++    P +V      +L  TRELA Q  +   + +TY  DI      GG +++  +++LK     I+
Sbjct:  318 NSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATY-TDITFCQLVGGFSLREQENVLKQRPDVII 445          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBP9_AJECN (ATP-dependent RNA helicase DBP9 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP9 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  250 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL----STLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTY 543
            I +  F    L P LL+A+    F  P+ +Q E IP A+ G DV+ +AK+G GKTA ++L    S LQQ    P    ++AL+L  TRELA Q+      FS +
Sbjct:   21 ITAHSFETLKLDPRLLQALTQQKFTKPTPIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPVLQSILQQKRNTPAHKSISALILVPTRELAEQVHRTAISFSAF 124          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBP10_MAGGR (ATP-dependent RNA helicase DBP10 OS=Magnaporthe grisea GN=DBP10 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = 1
Query:  235 KGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV--TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            KG  G  S GF+   L P LL+AI   GF  P+ +Q + IP  +   DV+  A++G GKTA FV+  +++   +  +V   AL++  +RELA Q     + F     D+K  +  GG +++
Sbjct:   82 KGKTGKKSGGFQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIERLRAHSARVGARALIMSPSRELALQTLKVVKEFGKG-TDLKTVLLVGGDSLE 201          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SPB4_ENCCU (ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon cuniculi GN=SPB4 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 44/123 (35.77%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  262 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQ----VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 618
            G  D  +   L + I ++GF   +EVQ +CIP+ + G DV+ Q+ +G GKT  F+   L       G+    VTA+V+  TRELA QI     R    L D+K   F GG++I+     +K E
Sbjct:    5 GIEDVAMNGRLKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVTAVVITPTRELALQI-----REVAGLFDVKCECFIGGMSIEEDYKRMKEE 122          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
IF4A3_NICPL5.358e-1141.67Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
DRS1_GIBZE5.358e-1133.61ATP-dependent RNA helicase DRS1 OS=Gibberella zeae... [more]
DRS1_BOTFB5.358e-1135.29ATP-dependent RNA helicase drs1 OS=Botryotinia fuc... [more]
DDX49_DICDI5.358e-1135.85Probable ATP-dependent RNA helicase ddx49 OS=Dicty... [more]
DDX20_DANRE5.358e-1137.07Probable ATP-dependent RNA helicase DDX20 OS=Danio... [more]
RHLB_PSEPK6.997e-1133.59ATP-dependent RNA helicase rhlB OS=Pseudomonas put... [more]
DRS1_COCIM6.997e-1131.78ATP-dependent RNA helicase DRS1 OS=Coccidioides im... [more]
DBP9_AJECN6.997e-1139.42ATP-dependent RNA helicase DBP9 OS=Ajellomyces cap... [more]
DBP10_MAGGR6.997e-1133.88ATP-dependent RNA helicase DBP10 OS=Magnaporthe gr... [more]
SPB4_ENCCU9.139e-1135.77ATP-dependent rRNA helicase SPB4 OS=Encephalitozoo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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