CN181474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_LODEL (ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus GN=RRP3 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11 Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 612 F +F L PELL +I + P+ +Q IP A+ G D++ A++G GKTA F + LQ ALVL TRELA+QI F+ + + V + G ++ +DL++ Sbjct: 100 FTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTLYTAAQPYYALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMR 215
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RRP3_CHAGB (ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum GN=RRP3 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11 Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 F+D + L A + G++ P+ +Q E IP A+ D+I A++G GKT F L LQ P + ALVL TRELA QI FE + L ++ A+ GG+++ Sbjct: 67 FQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQALLDKPQPLFALVLAPTRELAAQIAQSFEALGS-LISLRCALILGGLDM 173
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11 Identity = 34/91 (37.36%), Postives = 56/91 (61.54%), Query Frame = 1 Query: 316 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI 588 G P+ VQ C+P+ + G DV+ A++G GKTA F L L + +P V ALV+ TRELA+Q+ +F+ + L +++ +V GG+++ Sbjct: 77 GMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCL-NLRCSVIVGGMDM 166
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_NEOFI (ATP-dependent RNA helicase drs1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=drs1 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11 Identity = 41/126 (32.54%), Postives = 67/126 (53.17%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV---TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 F+DF L +LR + F P+ +Q + IP A+LG D++ A +G GKTA FV+ L++ P +V +L TRELA Q + + +T+ DI GG +++ +++LK I+ Sbjct: 301 FQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATH-TDITFCQLVGGFSLREQENILKKRPDVII 425
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DRS1_LODEL (ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus GN=DRS1 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11 Identity = 38/130 (29.23%), Postives = 70/130 (53.85%), Query Frame = 1 Query: 250 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQT--EPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633 + S F++ L +L+++ GF P+ VQ IP A+LG D++ A++G GKTA +++ +++ N A++L TRELA Q+ + ++ ++ + GG+++K + LK P IV Sbjct: 193 LKSKTFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIERLLYVKNSTSTKAIILTPTRELAIQVHDVGRKLGQFVSNLNFGMAVGGLSLKQQEQQLKTR-PDIV 321
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DDX59_RAT (Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus GN=Ddx59 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11 Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 1 Query: 286 PELLRA-IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV 582 PE L + SG+E P+ +Q + IP +LG D++ A +G GKTA F+L + + P +AL+L TRELA QI + + LP +K + GG+ Sbjct: 211 PETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRALPEDKTPSALILTPTRELAIQIERQAKELMRGLPRMKTVLLVGGL 310
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBP9_EMENI (ATP-dependent RNA helicase dbp9 OS=Emericella nidulans GN=dbp9 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11 Identity = 44/124 (35.48%), Postives = 62/124 (50.00%), Query Frame = 1 Query: 190 APDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ------QTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 543 A D +T+AN KG F L P L +A+V F P+ VQ + IP A+ G D++ +AK+G GKTA +VL LQ +P+ T L+L TRELA Q+ F+ + Sbjct: 7 ANDVPSTEANEAEEVKG--ADRDEDFETLNLDPRLRQALVKEKFSKPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAIDPSMKATTGLILVPTRELAEQVQKVITTFAAF 128
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DBP9_ASPCL (ATP-dependent RNA helicase dbp9 OS=Aspergillus clavatus GN=dbp9 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11 Identity = 41/119 (34.45%), Postives = 63/119 (52.94%), Query Frame = 1 Query: 205 ATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ------QTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 543 A A G+ AK ++ F + L P L +A++ F P+ VQ + IP A+ G D++ +AK+G GKTA +VL LQ +P+ T L+L TRELA Q+ +F+ + Sbjct: 13 AEVAEGKEAKDA----DNTDFENLNLDPRLRQALIKEQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQSVITKFTAF 127 The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bpback to top |