CN181474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_ASHGO (ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii GN=SUB2 PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.763e-46 Identity = 97/154 (62.99%), Postives = 119/154 (77.27%), Query Frame = 1 Query: 187 QAPDSVATKA--NGEAA-------KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 618 Q ++ AT+ NGE A KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P PG+V+ +VLC+ RELAYQI +E+ RFS Y+PD+K AVFYGG + + +LLKN+ Sbjct: 20 QVDNTKATEVAGNGEEAADGKDGDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTDTRKDIELLKNK 173
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_YEAST (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae GN=SUB2 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 5.130e-46 Identity = 90/130 (69.23%), Postives = 107/130 (82.31%), Query Frame = 1 Query: 232 KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 618 KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P PG+V +V+C+ RELAYQI +E+ RFS Y+PD+K AVFYGG I +LLKN+ Sbjct: 52 KKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNK 181
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_YEAS7 (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain YJM789) GN=SUB2 PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 5.130e-46 Identity = 90/130 (69.23%), Postives = 107/130 (82.31%), Query Frame = 1 Query: 232 KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 618 KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P PG+V +V+C+ RELAYQI +E+ RFS Y+PD+K AVFYGG I +LLKN+ Sbjct: 52 KKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNK 181
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_ASPTN (ATP-dependent RNA helicase sub2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sub2 PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 8.750e-46 Identity = 95/146 (65.07%), Postives = 111/146 (76.03%), Query Frame = 1 Query: 184 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 618 A A T G + KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEV CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q EP PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG I+ ++L N+ Sbjct: 32 APAKTGDLTVTGGRSDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEV---CIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNK 174
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_KLULA (ATP-dependent RNA helicase SUB2 OS=Kluyveromyces lactis GN=SUB2 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 2.546e-45 Identity = 97/155 (62.58%), Postives = 115/155 (74.19%), Query Frame = 1 Query: 196 DSVATKANGE---------AAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL-KNECPP 627 D+ AT+ N E + KKG YVGIHS+GF+DFLLKPEL RAI+D GFEHPSEVQ IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ +P G+V+ +VLC+ RELAYQI +E+ RFS Y+PD+K AVFYGG K DLL K E P Sbjct: 22 DNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVP 176
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: SUB2_PHANO (ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum GN=SUB2 PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 7.407e-45 Identity = 94/141 (66.67%), Postives = 111/141 (78.72%), Query Frame = 1 Query: 205 ATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTE--PNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 618 A A+GE KKG YVGIHS+GFRDFLLK EL+RAI D GFEHPSEVQ IPQAILG DV+CQAKSG+GKTAVFVL+TLQQ + P PG + LV+CHTRELAYQI +E+ RF+ +LPD+KV VFYGG + +LL N+ Sbjct: 35 APDASGE--KKGSYVGIHSTGFRDFLLKDELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVASILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVAKDIELLSNK 173
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.662e-20 Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 1 Query: 259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591 +GF DF LK ELL I ++GFE+PS +Q E IP A+ G D++ +AK+G GKTA FV+ LQQ P ++ AL++ TRELA Q + +L IKV V GG N++ Sbjct: 28 TGFEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKHL-GIKVMVTTGGTNLR 137
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.465e-18 Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 1 Query: 265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 624 F DF LK ELL I ++GFE PS +Q E IP A+ G DV+ +AK+G GKTA F++ +LQQ +P ++ AL+L TRELA Q +L I+ V GG ++K D+L+ P Sbjct: 32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHL-GIQCMVTTGGTSLK--DDILRLNDP 148
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18 Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 1 Query: 259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 624 S F DF L+ ELL I +GFE PS +Q + IP A+ G D++ +AK+G GKTA F++ TL + + + AL+L TRELA Q + ++P+++V + GG ++ D+L+ + P Sbjct: 36 SRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLR--DDILRLQQP 155
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18 Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 1 Query: 259 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 624 S F DF L+ ELL I +GFE PS +Q + IP A+ G D++ +AK+G GKTA F++ TL + + + AL+L TRELA Q + ++P+++V + GG ++ D+L+ + P Sbjct: 36 SRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLR--DDILRLQQP 155 The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bpback to top |