CN181474

Overview
NameCN181474
Unique NameCN181474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:7..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_GIBZE (ATP-dependent RNA helicase DHH1 OS=Gibberella zeae GN=DHH1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 47/120 (39.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 624
            F +F LK +LL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++  P   ++  L+L  TRELA Q     +    +L  I V V  GG  ++   D+++ + P
Sbjct:   44 FENFALKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKISKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGTGLR--DDIIRLQDP 160          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_CHAGB (ATP-dependent RNA helicase DHH1 OS=Chaetomium globosum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 591
            F DF LK +LL  I ++GFE PS +Q E IP A++G D++ +AK+G GKTA FV+  L++  P   ++  L+L  TRELA Q     +    +L  I V V  GG  ++
Sbjct:   13 FEDFGLKRDLLMGIFEAGFEKPSPIQEESIPVALVGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGTGLR 120          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 49/123 (39.84%), Postives = 65/123 (52.85%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  LQ  +P       LVL  TRELA Q+      FS ++  + V   YGG    +    L+ + P IV
Sbjct:    8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIV 129          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DEAD_HAEIN (Cold-shock DEAD box protein A homolog OS=Haemophilus influenzae GN=deaD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  L   +L+A+ D GFE PS +Q  CIP  + G DV+  A++G GKTA F L  L Q +P+      LV+  TRELA Q+    E F  Y    ++   YGG    I    LK     +V
Sbjct:    7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQGAQVVV 129          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 49/123 (39.84%), Postives = 65/123 (52.85%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  LQ  +P       LVL  TRELA Q+      FS ++  + V   YGG    +    L+ + P IV
Sbjct:    8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIV 129          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 49/123 (39.84%), Postives = 65/123 (52.85%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  LQ  +P       LVL  TRELA Q+      FS ++  + V   YGG    +    L+ + P IV
Sbjct:    8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIV 129          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 49/123 (39.84%), Postives = 65/123 (52.85%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  LQ  +P       LVL  TRELA Q+      FS ++  + V   YGG    +    L+ + P IV
Sbjct:    8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIV 129          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.243e-16
Identity = 48/120 (40.00%), Postives = 69/120 (57.50%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 624
            F DF +K ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GKTA FV+  L++  P   +V  L+L  TRELA Q     +    +L  I V V  GG  ++   D+L+ + P
Sbjct:   49 FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHL-GINVMVTTGGTTLR--DDILRLQEP 165          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.243e-16
Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPPIV 633
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  L   +P       LVL  TRELA Q+      FS ++  + V   YGG    +    L+ + P IV
Sbjct:    8 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIV 129          
BLAST of CN181474 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  265 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 510
            F DF LK ELL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA F++  LQ  +P   +V AL+L  TRELA Q
Sbjct:   32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQ 113          
The following BLAST results are available for this feature:
BLAST of CN181474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DHH1_GIBZE1.456e-1639.17ATP-dependent RNA helicase DHH1 OS=Gibberella zeae... [more]
DHH1_CHAGB1.901e-1641.28ATP-dependent RNA helicase DHH1 OS=Chaetomium glob... [more]
DEAD_SHIFL2.483e-1639.84Cold-shock DEAD box protein A OS=Shigella flexneri... [more]
DEAD_HAEIN2.483e-1638.21Cold-shock DEAD box protein A homolog OS=Haemophil... [more]
DEAD_ECOLI2.483e-1639.84Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECOL62.483e-1639.84Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECO572.483e-1639.84Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DHH1_BOTFB3.243e-1640.00ATP-dependent RNA helicase dhh1 OS=Botryotinia fuc... [more]
DEAD_KLEPN3.243e-1639.02Cold-shock DEAD box protein A OS=Klebsiella pneumo... [more]
DHH1_CANAL4.235e-1651.22ATP-dependent RNA helicase DHH1 OS=Candida albican... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001A02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181474 ID=CN181474; Name=CN181474; organism=Citrus sinensis; type=EST; length=634bp
GAGGATTCTACTCCCTTTCAAATCTTTTTCTCCTTTTATTTTGGCTAATT
ATTTTCATTTGCAGCACTCTCTCGCCAAACCCTAACCCTAAAACCCCAAC
CGTTTATTCAAATACTGGCAGGAATGGGAGAGACAAGAGACAACGAGTAC
GAGGATGAGCTTCTCGACTACGAGGAAGAAGATGCTCAAGCTCCCGATTC
CGTCGCTACCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTA
TACACAGTTCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGT
GCAATTGTGGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATG
CATACCTCAAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAG
GGATGGGGAAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAG
CCAAATCCAGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTT
AGCTTATCAGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTG
ATATCAAGGTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAA
GATTTGCTGAAAAACGAATGTCCCCCAATTGTTG
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