CN181472

Overview
NameCN181472
Unique NameCN181472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2887 contig Csv1_Contig2887:84..589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181472 vs. ExPASy Swiss-Prot
Match: MBF1_NEUCR (Multiprotein-bridging factor 1 OS=Neurospora crassa GN=mbf-1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.517e-11
Identity = 42/121 (34.71%), Postives = 63/121 (52.07%), Query Frame = 3 
Query:  135 VNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARN-----DKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTMLERALGVKLRGKK*GRDK 482
            +NAA+R+G  I T +K  AG   +           +D   + +    V  E+  AI +AR+     DK +TQ +LA   N    +I +YE G+ +P+Q++L  LER L VKLRG   G+ K
Sbjct:   33 LNAAQRSGNIIATEKKYAAGNTASKPGVEGQRLTMVDRSDDIVKPKTVSKEVGAAIQKARSAIMIGDKAMTQKELATRCNSTQAIIAQYERGEGVPDQKLLGNLERVLNVKLRGSDIGKPK 153
[Close]
BLAST of CN181472 vs. ExPASy Swiss-Prot
Match: MBF1_EMENI (Multiprotein-bridging factor 1 OS=Emericella nidulans GN=mbf1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.294e-11
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 3 
Query:  135 VNAARRAGADIETVRKSHAGTNKA-ASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDK--KLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTMLERALGVKLRGKK*GRDK 482
            +NAA+R G  + T +K  +G +   AS+    +  K+D   + +    V  ++  AI + R D+  K+TQ +LA   N    VIQ++E G A P+Q++L+ +ER L +KLRG   G++K
Sbjct:   31 LNAAQRQGLVVGTEKKFASGNSAGRASAVEGQHLTKVDRSDDIVKPKTVGLQVADAIKKRRTDEGYKMTQKELATKCNTTVTVIQDFERGTAAPDQKVLSAMERVLNIKLRGSDIGKEK 149
The following BLAST results are available for this feature:
BLAST of CN181472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MBF1_NEUCR2.517e-1134.71Multiprotein-bridging factor 1 OS=Neurospora crass... [more]
MBF1_EMENI4.294e-1134.45Multiprotein-bridging factor 1 OS=Emericella nidul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001A01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181472 ID=CN181472; Name=CN181472; organism=Citrus sinensis; type=EST; length=509bp
CCCCAAACTTTTAGTGAAGAGAATTTGATCGAGGAGTGGACATGGCCGGA
ATCGGACCGATCACACAGGACTGGGAGCCGGTGGTGATTAAGAAGAAAGC
CCCCAACGCCGCCGCCAAGAAGGACGAGAAGGTCGTTAACGCTGCCCGAC
GCGCCGGTGCCGATATCGAGACTGTCAGAAAATCACATGCTGGCACAAAC
AAGGCTGCCTCGAGTAGCACTTCTCTGAACACCAGGAAGCTTGATGAAGA
TACAGAGAACCTTGCTCATGATCGAGTGCCTAGCGAACTCAAGAAAGCCA
TTGTTCAGGCACGAAATGATAAGAAACTTACCCAGTCTCAACTTGCTCAG
TTGATCAATGAGAAGCCCCAGGTGATTCAGGAATATGAATCAGGAAAAGC
CATTCCTAATCAGCAGATACTTACCATGCTGGAGAGGGCCCTTGGTGTGA
AGCTTCGAGGAAAGAAGTGAGGGAGGGATAAAATAATAACTTCTACCGGG
ACTTGATGT
back to top