CK940137

Overview
NameCK940137
Unique NameCK940137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.460e-36
Identity = 68/139 (48.92%), Postives = 93/139 (66.91%), Query Frame = 1 
Query:  220 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 636
            A KR+ ++   LQ+DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   E A  +  ++ +YNR  RE
Sbjct:    2 ALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLARE 140
[Close]
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.460e-36
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 1 
Query:  220 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 636
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.460e-36
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 1 
Query:  220 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 636
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.460e-36
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 1 
Query:  220 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 636
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.460e-36
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 1 
Query:  220 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 636
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.460e-36
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 1 
Query:  220 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 636
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.443e-35
Identity = 66/139 (47.48%), Postives = 93/139 (66.91%), Query Frame = 1 
Query:  220 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 636
            A KR+ ++   L QDPPA  S  P    +  W A I GP+D+P+ GG F LT+ F  +YP KPP V F +R++HPN+ ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E A+++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTARE 140
[Close]
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.443e-35
Identity = 66/139 (47.48%), Postives = 93/139 (66.91%), Query Frame = 1 
Query:  220 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 636
            A KR+ ++   L QDPPA  S  P    +  W A I GP+D+P+ GG F LT+ F  +YP KPP V F +R++HPN+ ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E A+++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTARE 140
[Close]
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.462e-35
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 1 
Query:  220 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 636
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
[Close]
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.462e-35
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 1 
Query:  220 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 636
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
The following BLAST results are available for this feature:
BLAST of CK940137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UB2D4_HUMAN8.460e-3648.92Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D2_XENLA8.460e-3648.92Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT8.460e-3648.92Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE8.460e-3648.92Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN8.460e-3648.92Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN8.460e-3648.92Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
U2D2B_RAT1.443e-3547.48Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE1.443e-3547.48Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UB2D3_RAT2.462e-3548.92Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB2.462e-3548.92Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004741_B07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940137 ID=CK940137; Name=CK940137; organism=Citrus sinensis; type=EST; length=879bp
GGGGAAAAACAAAACAAAATTGGGACCGCTGACCTGAACGACTCTCTCTC
TCTCTCTCTTTTGTTTCTCTGATCAAATTGAGTACCATGGAATTCTTTCT
CTGATACCGCCTGCTTTTCGATTGTTTCCCGAGAAAAATCTCGCTGCGAT
TCTGAAGCTTTTACTGCAATCAACGCTACTTGCCGCGTCAGCTCGTAGGC
AGTGAGAATGTCGACTCCTGCAAGGAAGAGATTGATGAGGGATTTTAAGA
GGTTACAACAAGATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGGACAAC
AGTATAATGCTTTGGAATGCTGTTATATTCGGGCCGGATGACACCCCATG
GGATGGAGGTACGTTTAAATTGACACTTCAGTTCACAGAGGATTATCCAA
ATAAGCCACCAACAGTGCGCTTTGTTTCTCGGATGTTCCATCCAAATATT
TATGCGGATGGAAGCATTTGCTTGGACATTCTACAAAATCAGTGGAGTCC
AATTTACGATGTAGCAGCAATACTCACGTCAATTCAGTCATTGCTTTGTG
ACCCAAATCCAAACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTTAGC
GAGAACAAGCGTGAATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAG
TTGGACTGCTGACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAA
TAGTCCAATGGCTTGTTCTAAATAACATTTAAGATTCAAAAGGTTGGTGG
TGTGAACTCTTGACATGTTTTATGTTTGTTTCGCCTTATGAGGATGGATG
GTTGGCCTCTTATTGTTAATTTCTCGTCTTTGGGTACATCGAAACTCNNN
NNNNAAAAAAAAAAAAAAAAAAAAAAAAA
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