CN188563

Overview
NameCN188563
Unique NameCN188563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.056e-38
Identity = 85/138 (61.59%), Postives = 95/138 (68.84%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPFR+  FP   S         ETSA  N R++WKETPEAHVFKAD PGL             VLQISG+R +E+EDKND W R E SSG F RRFRLPEN KMDQ+KASMENGVLTVTVPK EE +K + K+IEISG
Sbjct:   26 DPFRELGFPGTNS--------GETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPK-EEMKKPDVKSIEISG 154          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.297e-38
Identity = 84/138 (60.87%), Postives = 94/138 (68.12%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF++  F    S         ETSA  N R++WKETPEAHVFKAD PGL             VLQISG+R +E+EDKNDTWHR E SSG F RRFRLPEN KMDQ+KASMENGVLTVTVPK EE    + K+IEISG
Sbjct:   26 DPFKELGFTVSNS--------GETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPK-EEVNNPDVKSIEISG 154          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.180e-37
Identity = 83/139 (59.71%), Postives = 98/139 (70.50%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVE-EARKANAKAIEISG 643
            DPF++  FPS  S           SA+ NARV+WKET EAHVFKAD PG+             VL+ISG+R +E+E+K DTWHR E SSG FSR+FRLPENVKMDQ+KASMENGVLTVTVPKVE   +KA  K+I+ISG
Sbjct:   28 DPFKELQFPSSSS-----------SAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVTVPKVETNKKKAQVKSIDISG 155          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.629e-37
Identity = 83/140 (59.29%), Postives = 95/140 (67.86%), Query Frame = -3
Query:  230 DPFRDF--PFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF DF  PF   +   + +    +T+A  NARV+WKETPE+HVFKAD PG+             VL ISGQR  E+EDKND WHR E SSG F RRFRLPEN K+DQ+KASMENGVLTVTVPK  E +K   KAIEISG
Sbjct:   11 DPFADFWDPFDGVFRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKA-EVKKPEVKAIEISG 149          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.484e-37
Identity = 81/138 (58.70%), Postives = 95/138 (68.84%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF+DF  P+       S    E SA VN RV+WKET EAHV KAD PGL             VLQISG+R +E+EDKNDTWHR + SSG F RRFRLPEN K++Q+KA MENGVLTVT+PK EE +K++ K IEISG
Sbjct:   25 DPFKDFHVPT-------SSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPK-EEVKKSDVKPIEISG 154          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.990e-37
Identity = 79/138 (57.25%), Postives = 98/138 (71.01%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF+DFP  +    + +S+F  ET+A VN  ++WKETP+AHVFKAD PGL             VLQISG+R  E+E+KND WHR E SSG F RRFRLPEN K+D++KA+M NGV+TVTVPKV E +K   KAI+ISG
Sbjct:   25 DPFKDFPLVT----SSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKV-EIKKPEVKAIDISG 157          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.704e-36
Identity = 85/144 (59.03%), Postives = 99/144 (68.75%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALS--SQFP----PETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF  FPF SG S + S    FP     ET+A   AR++WKETPEAHVFKAD PGL             +LQISG+R  E+E+K D WHR E SSG F RRFRLP+N K +QIKASMENGVLTVTVPK EEA+K + K+I+ISG
Sbjct:   19 DPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPK-EEAKKPDVKSIQISG 161          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.475e-36
Identity = 78/138 (56.52%), Postives = 95/138 (68.84%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF+D+P  +  S   SS+F  ET+A  N  ++WKETP+AHVFKAD PGL             VLQISG+R  E+E+KN+ WHR E SSG F RRFRLPEN  +D++KA MENGVLTVTVPKV E +K   K+I ISG
Sbjct:   25 DPFQDYPLIT--SSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKV-EMKKPEVKSIHISG 159          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.105e-35
Identity = 83/144 (57.64%), Postives = 98/144 (68.06%), Query Frame = -3
Query:  230 DPFRDFPFPSGY--SCALSSQFP----PETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF  FPF SG   S ++   FP     ET+A   AR++WKETPEAHVFKAD PGL             VLQISG+R  E+E+K D WHR E SSG F RRFRLPEN K +QIKASMENGVLTVTVPK EE +K + K+I+++G
Sbjct:   19 DPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPK-EEPKKPDVKSIQVTG 161          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.443e-35
Identity = 80/136 (58.82%), Postives = 92/136 (67.65%), Query Frame = -3
Query:  236 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEI 643
            DPF  F  PS  S    S+   ET+A  NAR++WKETPEAHVFKAD PG+             VL+ISGQR  E+E+KNDTWHR E SSG F R+FRLPEN K+DQ+KA MENGVLTVTVPK  EA K   KAI +
Sbjct:   28 DPF--FGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTVPK-NEAPKPQVKAINV 160          
The following BLAST results are available for this feature:
BLAST of CN188563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
HSP11_SOLPE4.056e-3861.5917.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP12_SOLPE5.297e-3860.8717.6 kDa class I heat shock protein OS=Solanum per... [more]
HS17A_ARATH1.180e-3759.7117.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HS16C_ORYSJ2.629e-3759.2916.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP15_SOYBN4.484e-3758.7017.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_DAUCA9.990e-3757.2517.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS17A_ORYSJ1.704e-3659.0317.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP12_DAUCA6.475e-3656.5218.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS181_ORYSJ1.105e-3557.6418.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_CHERU1.443e-3558.8218.3 kDa class I heat shock protein OS=Chenopodium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188563 ID=CN188563; Name=CN188563; organism=Citrus sinensis; type=EST; length=645bp
TCTTTTTCATTTTTTGATTTTTTAAATTCTAAAGAGCACGAATACCTTCT
TAAAAATATCAAAAGACGCGCAGGGTTACAAAATTACACATCCCATGATT
ACACGACACACAAAAATGGGAGGCGTCACATAAATACAACACAAAACGAA
GTAATAAACCACGCAAACACACTCTGGATTCAACACAAATTTTAAATCAT
CTTCCTTTATTAAATATATCAATTTATCAGCCAGAAATTTCAATAGCCTT
GGCATTAGCTTTCCTGGCCTCCTCCACCTTAGGGACTGTAACAGTGAGCA
CACCATTCTCCATGGAAGCCTTTATCTGATCCATCTTCACATTCTCAGGC
AGCCTGAACCTCCTCGAGAACATGCCGCTGCTGCACTCCCAGCGATGCCA
CGTGTCGTTCTTGTCCTCCCTCTCGATCCCCCTCTGCCCGCTTATCTGAA
GCACCCTGTCGTCCTCGACCTCGACCTTCACTTCCACTTTCCTCAGCCCC
GGGAAATCGGCCTTGAACACGTGGGCTTCCGGGGTTTCCTTCCACTCCAC
GCGGGCGTTAACGACAGCGGAGGTTTCTGGAGGGAACTGGGAGGACAGCG
CACACGAATAACCTGACGGGAAAGGGAAGTCCCTGAATGGATCCC
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