CN188563

Overview
NameCN188563
Unique NameCN188563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.884e-35
Identity = 75/123 (60.98%), Postives = 91/123 (73.98%), Query Frame = -3
Query:  230 LSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 598
            +S++   ET+A+VNAR++WKETPEAHV KAD PG+             VLQISG+R  E+E+K+DTWHR E SSG F RRFRLPEN KMD++KA MENGVLTV VPK EE +K   KAI+ISG
Sbjct:   31 ISTEPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTVVVPKEEEEKKPMVKAIDISG 153          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.461e-35
Identity = 79/138 (57.25%), Postives = 96/138 (69.57%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF  F  PSG + A +     + +A  NA+V+W+ETPEAHVFKAD PGL             +LQISG+R  E E+KND WHR E SSG F+RRFRLPEN KM++IKASMENGVL+VTVPKV E +K   K+I+ISG
Sbjct:   25 DPFEGFLTPSGLANAPAM----DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPE-KKPEVKSIDISG 157          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.461e-35
Identity = 77/132 (58.33%), Postives = 90/132 (68.18%), Query Frame = -3
Query:  230 PFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 625
            PF S +   + +    +T+A  NAR++WKETPE+HVFKAD PG+             VL ISGQR  E+EDKND WHR E SSG F RRFRLPEN K+DQ+KA MENGVLTVTVPK  E +K   KAIEISG
Sbjct:   20 PFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKA-EVKKPEVKAIEISG 150          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.482e-35
Identity = 80/142 (56.34%), Postives = 95/142 (66.90%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPP----ETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DP   FPF SG S + S    P    + +A   AR++WKETPE HVFKAD PGL             +LQISG+R  E+E+K+D WHR E SSG F RRFRLPEN K +QIKASMENGVLTVTVPK EE +K + K+I+ISG
Sbjct:   19 DPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPK-EEPKKPDVKSIQISG 159          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.482e-35
Identity = 76/132 (57.58%), Postives = 90/132 (68.18%), Query Frame = -3
Query:  230 PFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 625
            PF S +   + +    +T+A  NAR++WKETPE+HVFKAD PG+             VL ISGQR  E+EDKND WHR E SSG F RRFRLPEN K+DQ+KA +ENGVLTVTVPK  E +K   KAIEISG
Sbjct:   20 PFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKA-EVKKPEVKAIEISG 150          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.160e-35
Identity = 81/138 (58.70%), Postives = 96/138 (69.57%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF  FPF SG S +L  +   + +A   AR++WKETPEAHVFKAD PGL             VLQISG+R  E+E+K D WHR E SSG F RRFRLPEN K +QIKASMENGVLTVTVPK EE +K + K+I+I+G
Sbjct:   19 DPFDGFPFGSG-SGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPK-EEPKKPDVKSIQITG 154          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.061e-34
Identity = 77/138 (55.80%), Postives = 92/138 (66.67%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF  F  PS  S   ++    + +A  NARV+WKETPEAHVFKAD PGL             VLQISG+R  E E+KND WHR E +SG F RRFRLPEN KM+++KA+MENGVLTV VPK  E +K   K+I+ISG
Sbjct:   25 DPFEGFFTPS--SALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPE-KKPQVKSIDISG 159          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.350e-33
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = -3
Query:  230 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF  F  P      L++    + +A  NA+V+W+ETPEAHVFKAD PGL             +LQISG+R  E E+K+DTWHR E SSG F RRFRLPEN K++++KASMENGVL+VTVPKV+E+ K   K+++ISG
Sbjct:   25 DPFEGFLTPG-----LTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQES-KPEVKSVDISG 156          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.143e-32
Identity = 78/142 (54.93%), Postives = 93/142 (65.49%), Query Frame = -3
Query:  230 DPFRDF---PFPSGYSCALS-SQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF D    PF +  S   + S    ET+A  NARV+WKETPEAHVFK D PG+             VL +SG+R  E+EDKND WHR E SSG F RRFRLPE+ K++++KA +ENGVLTVTVPK  E +K   KAIEISG
Sbjct:   11 DPFADLWADPFDTFRSIVPAISGGSSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKA-EVKKPEVKAIEISG 151          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.272e-31
Identity = 76/142 (53.52%), Postives = 93/142 (65.49%), Query Frame = -3
Query:  230 DPFRDF---PFPSGYSCALS-SQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPF D    PF +  S   + S    ET+A  NAR++WKETPEAHVFKAD PG+             VL +SG+R  E+EDKND WHR E SSG F RRFRL E+ K++++KA +ENGVLTVTVPK  E +K   KAI+ISG
Sbjct:   11 DPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA-EVKKPEVKAIQISG 151          
The following BLAST results are available for this feature:
BLAST of CN188563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
HSP11_HELAN1.884e-3560.9817.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS17C_ARATH2.461e-3557.2517.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS16B_ORYSJ2.461e-3558.3316.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS177_ORYSJ5.482e-3556.3417.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_ORYSJ5.482e-3557.5816.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS174_ORYSJ7.160e-3558.7017.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS181_ARATH6.061e-3455.8018.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP17_ARATH1.350e-3353.6217.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16A_WHEAT1.143e-3254.9316.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS16B_WHEAT6.272e-3153.5216.9 kDa class I heat shock protein 2 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188563 ID=CN188563; Name=CN188563; organism=Citrus sinensis; type=EST; length=645bp
TCTTTTTCATTTTTTGATTTTTTAAATTCTAAAGAGCACGAATACCTTCT
TAAAAATATCAAAAGACGCGCAGGGTTACAAAATTACACATCCCATGATT
ACACGACACACAAAAATGGGAGGCGTCACATAAATACAACACAAAACGAA
GTAATAAACCACGCAAACACACTCTGGATTCAACACAAATTTTAAATCAT
CTTCCTTTATTAAATATATCAATTTATCAGCCAGAAATTTCAATAGCCTT
GGCATTAGCTTTCCTGGCCTCCTCCACCTTAGGGACTGTAACAGTGAGCA
CACCATTCTCCATGGAAGCCTTTATCTGATCCATCTTCACATTCTCAGGC
AGCCTGAACCTCCTCGAGAACATGCCGCTGCTGCACTCCCAGCGATGCCA
CGTGTCGTTCTTGTCCTCCCTCTCGATCCCCCTCTGCCCGCTTATCTGAA
GCACCCTGTCGTCCTCGACCTCGACCTTCACTTCCACTTTCCTCAGCCCC
GGGAAATCGGCCTTGAACACGTGGGCTTCCGGGGTTTCCTTCCACTCCAC
GCGGGCGTTAACGACAGCGGAGGTTTCTGGAGGGAACTGGGAGGACAGCG
CACACGAATAACCTGACGGGAAAGGGAAGTCCCTGAATGGATCCC
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