CN188563

Overview
NameCN188563
Unique NameCN188563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.552e-24
Identity = 67/133 (50.38%), Postives = 80/133 (60.15%), Query Frame = -3
Query:  230 PSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIERE--DKNDT-WHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 619
            P G   +L+ + P     + N RV+WKETP AHVF AD PG+             VL ISG+R  E +   KND  WH  E SSG F RRFRLP   ++DQ+ ASM+NGVLTVTVPK EE +K   KAI ISG
Sbjct:   23 PFGAVRSLAERCP----VLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPK-EETKKPQLKAIPISG 150          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.354e-24
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = -3
Query:  230 LQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 451
            LQISG+R +E+EDKNDTWHR E SSG F R FRLP+N K+DQ+KASMENGVLTVTVPK EE +K + KAIEISG
Sbjct:    2 LQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPK-EEIKKPDVKAIEISG 74          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.951e-22
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = -3
Query:  230 AVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 568
            A+  ARV+WKETPE HV   D PGL             VL++SG+R  E E K D WHR E S G F R+FRLP+NV +D +KA +ENGVLT+T+ K+   +    + + I+G
Sbjct:   63 AMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTLDKLSPGKIKGPRVVSIAG 175          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.712e-20
Identity = 49/108 (45.37%), Postives = 66/108 (61.11%), Query Frame = -3
Query:  236 NARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEI 559
            +ARV+WKETPE HV   D PGL             VL++SG+R  E + K D WHR E S G F R+F+LP+NV +D +KA MENGVLT+T+ K+   +    + + I
Sbjct:   74 HARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLTLHKLSHDKIKGPRMVSI 181          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = -3
Query:  233 AVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEIS 568
            A+  ARV+WKET E H    D PGL             VL++SG+R  E E K D WHR E S G F R+F+LP+NV M+ +KA +ENGVLT+ + K+   +    + + I+
Sbjct:   67 ALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTINLTKLSPEKVKGPRVVNIA 178          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.394e-19
Identity = 57/141 (40.43%), Postives = 77/141 (54.61%), Query Frame = -3
Query:  233 DPFRDF----PFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEIS 643
            +PF D      F +  S A ++   P T     A ++WKET  AHVF AD PG+             VL+ISGQR    E+K + WHR E SS  F R  RLP N   D + A+++NGVLT+T+PK +  RK +A+ I I+
Sbjct:   42 EPFMDAISLTAFAAAPSAAAAAAGVPST-----ASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTITIPK-DNDRKPHARIIPIT 176          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.443e-16
Identity = 56/150 (37.33%), Postives = 79/150 (52.67%), Query Frame = -3
Query:  230 DPFR---DFPF-PSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXV-LQISGQR---GIEREDKNDT----WHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEISG 643
            DPFR     P  P+G   A ++   P  +AV  AR +WKETPEAHV   D PG+               L++SG+R   G   E++ +     WHR E ++G F RRFR+P    + ++ A +++GVLTVTVPKV   R    + + I G
Sbjct:   41 DPFRVLEQSPLRPAGGVAAAAAAGEP--AAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVTVPKVPGHRGREPRVVAIDG 188          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.694e-15
Identity = 49/124 (39.52%), Postives = 69/124 (55.65%), Query Frame = -3
Query:  275 DPFRDFPFPSGYSCALSSQFPPETSAVVNARVEWKETPEAHVFKADFP-GLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKV 643
            +PF  F    G + A  +    +TSA  N  +E +ET EA+VF+AD P G+             VL I+G+R + RE+K    H  E S   F  RF LP++  +D ++ASM+ G+LTVTVPKV
Sbjct:   16 NPFSIF----GTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVTVPKV 135          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.458e-13
Identity = 42/98 (42.86%), Postives = 56/98 (57.14%), Query Frame = -3
Query:  275 ARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRG----IEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKV 556
            ARV+W+ET +AH    D PG+             VL+ISG+R      E++   D WHR E S G F R+ RLP+N  +D I AS++NGVLTV   K+
Sbjct:   76 ARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTVRFRKL 173          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.898e-13
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = -3
Query:  233 ARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWH--RWECSSG---MFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEIS 556
            A ++W E+  +H+FK + PG              VL I G+   E + +N  WH    E  SG    F RR  LPENVK+DQ+KA +ENGVLTV VPK   ++ +  + + I+
Sbjct:   22 ALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTVVVPKDTSSKSSKVRNVNIT 134          
The following BLAST results are available for this feature:
BLAST of CN188563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
HS166_ORYSJ2.552e-2450.3816.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP12_SOYBN4.354e-2474.32Class I heat shock protein (Fragment) OS=Glycine m... [more]
HSP41_SOYBN6.951e-2246.0222.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA1.712e-2045.3722.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH5.507e-1941.9622.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS189_ORYSJ9.394e-1940.4318.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ7.443e-1637.3321.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS17B_ORYSJ3.694e-1539.5217.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS232_ORYSJ3.458e-1342.8623.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS157_ARATH5.898e-1338.0515.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006E23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188563 ID=CN188563; Name=CN188563; organism=Citrus sinensis; type=EST; length=645bp
TCTTTTTCATTTTTTGATTTTTTAAATTCTAAAGAGCACGAATACCTTCT
TAAAAATATCAAAAGACGCGCAGGGTTACAAAATTACACATCCCATGATT
ACACGACACACAAAAATGGGAGGCGTCACATAAATACAACACAAAACGAA
GTAATAAACCACGCAAACACACTCTGGATTCAACACAAATTTTAAATCAT
CTTCCTTTATTAAATATATCAATTTATCAGCCAGAAATTTCAATAGCCTT
GGCATTAGCTTTCCTGGCCTCCTCCACCTTAGGGACTGTAACAGTGAGCA
CACCATTCTCCATGGAAGCCTTTATCTGATCCATCTTCACATTCTCAGGC
AGCCTGAACCTCCTCGAGAACATGCCGCTGCTGCACTCCCAGCGATGCCA
CGTGTCGTTCTTGTCCTCCCTCTCGATCCCCCTCTGCCCGCTTATCTGAA
GCACCCTGTCGTCCTCGACCTCGACCTTCACTTCCACTTTCCTCAGCCCC
GGGAAATCGGCCTTGAACACGTGGGCTTCCGGGGTTTCCTTCCACTCCAC
GCGGGCGTTAACGACAGCGGAGGTTTCTGGAGGGAACTGGGAGGACAGCG
CACACGAATAACCTGACGGGAAAGGGAAGTCCCTGAATGGATCCC
back to top