CN188563

Overview
NameCN188563
Unique NameCN188563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.823e-12
Identity = 45/126 (35.71%), Postives = 65/126 (51.59%), Query Frame = -3
Query:  233 FPPE-TSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISG-------QRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEIS 586
            FPP+  SA   A ++W ETP +HV + + PGL             VL + G       ++  ERE K+  WH  E     F+R   LP  V+++QI+AS++NGVLTV VPK     +   + I +S
Sbjct:   19 FPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKERERE-KDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVVPKEPAPARPRTRPIAVS 143          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = -3
Query:  263 EWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEAR 547
            E +ET EA++FKAD PG+              + +SG+R  E+ ++++ ++ +E + G FSR F LPE V  D ++A ++NGVLT+T+PK  E +
Sbjct:   57 EVRETKEAYIFKADLPGVDEKDIEVTLTGDR-VSVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLTLPKRPEVQ 150          
BLAST of CN188563 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 44/122 (36.07%), Postives = 58/122 (47.54%), Query Frame = -3
Query:  236 ALSSQFPPETSAVVNARVEWKETPEAHVFKADFPGLXXXXXXXXXXXXXVLQISGQRGIEREDKNDTWHRWECSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANAKAIEI 601
            A S  +  +  A+     + KE P ++VF  D PGL             VL ISG+R  E E +   + R E   G F R+F LPEN   D I A  ++GVLTVTV K+        K IE+
Sbjct:   31 APSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEV 152          
The following BLAST results are available for this feature:
BLAST of CN188563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
HSP16_ORYSJ3.823e-1235.7116.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
SP21_STIAU4.993e-1237.89Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HSP21_SOLPE1.897e-1136.0717.3 kDa class II heat shock protein OS=Solanum pe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006E23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188563 ID=CN188563; Name=CN188563; organism=Citrus sinensis; type=EST; length=645bp
TCTTTTTCATTTTTTGATTTTTTAAATTCTAAAGAGCACGAATACCTTCT
TAAAAATATCAAAAGACGCGCAGGGTTACAAAATTACACATCCCATGATT
ACACGACACACAAAAATGGGAGGCGTCACATAAATACAACACAAAACGAA
GTAATAAACCACGCAAACACACTCTGGATTCAACACAAATTTTAAATCAT
CTTCCTTTATTAAATATATCAATTTATCAGCCAGAAATTTCAATAGCCTT
GGCATTAGCTTTCCTGGCCTCCTCCACCTTAGGGACTGTAACAGTGAGCA
CACCATTCTCCATGGAAGCCTTTATCTGATCCATCTTCACATTCTCAGGC
AGCCTGAACCTCCTCGAGAACATGCCGCTGCTGCACTCCCAGCGATGCCA
CGTGTCGTTCTTGTCCTCCCTCTCGATCCCCCTCTGCCCGCTTATCTGAA
GCACCCTGTCGTCCTCGACCTCGACCTTCACTTCCACTTTCCTCAGCCCC
GGGAAATCGGCCTTGAACACGTGGGCTTCCGGGGTTTCCTTCCACTCCAC
GCGGGCGTTAACGACAGCGGAGGTTTCTGGAGGGAACTGGGAGGACAGCG
CACACGAATAACCTGACGGGAAAGGGAAGTCCCTGAATGGATCCC
back to top