CN188561 | Citrus Genome Database

Overview


Name	CN188561
Unique Name	CN188561
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	707

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TERA_XENLA (Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 68/151 (45.03%), Postives = 87/151 (57.62%), Query Frame = 3

Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 521
            PR +L  GPPGTGKT  AR +AN+ G     +    +MSK  GESE  L K F  A E    AIIF+DE+D+ A  R+    E  RRI+S LL  +DG +Q   V+V+AATNR   +DPAL    RFD  +  G+PD   R EI   + K+
Sbjct:  238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKN 387

HSP 2 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 64/221 (28.96%), Postives = 108/221 (48.87%), Query Frame = 3

Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE---ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQEYIE 695
            KF     + VLF GPPG GKT  A+ IAN+     + +    +++ ++GESE  + ++F  A +     ++F DE+DS A AR   + +   A  R+++ +L ++DG    K V +I ATNR   +DPA++   R D +I   LPD ++R  I     +                    SG D+ ++CQ+A +    + I  +I ++ ++   P   E  E
Sbjct:  505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSIKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMAILKANLRKSPVAKDVDVDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERDRQTNPSAMEVEE 724

BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 68/151 (45.03%), Postives = 87/151 (57.62%), Query Frame = 3

Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 521
            PR +L  GPPGTGKT  AR +AN+ G     +    +MSK  GESE  L K F  A E    AIIF+DE+D+ A  R+    E  RRI+S LL  +DG +Q   V+V+AATNR   +DPAL    RFD  +  G+PD   R EI   + K+
Sbjct:  238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387

HSP 2 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 65/221 (29.41%), Postives = 108/221 (48.87%), Query Frame = 3

Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE---ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQEYIE 695
            KF     + VLF GPPG GKT  A+ IAN+     + +    +++ ++GESE  + ++F  A +     ++F DE+DS A AR   + +   A  R+++ +L ++DG    K V +I ATNR   +DPA++   R D +I   LPD ++R  I     +                    SG D+ ++CQ+A +    + I  +I ++ E+   P   E  E
Sbjct:  505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEE 724

BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 68/151 (45.03%), Postives = 87/151 (57.62%), Query Frame = 3

Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 521
            PR +L  GPPGTGKT  AR +AN+ G     +    +MSK  GESE  L K F  A E    AIIF+DE+D+ A  R+    E  RRI+S LL  +DG +Q   V+V+AATNR   +DPAL    RFD  +  G+PD   R EI   + K+
Sbjct:  238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387

HSP 2 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 65/221 (29.41%), Postives = 108/221 (48.87%), Query Frame = 3

Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE---ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQEYIE 695
            KF     + VLF GPPG GKT  A+ IAN+     + +    +++ ++GESE  + ++F  A +     ++F DE+DS A AR   + +   A  R+++ +L ++DG    K V +I ATNR   +DPA++   R D +I   LPD ++R  I     +                    SG D+ ++CQ+A +    + I  +I ++ E+   P   E  E
Sbjct:  505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEE 724

BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 68/151 (45.03%), Postives = 87/151 (57.62%), Query Frame = 3

Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 521
            PR +L  GPPGTGKT  AR +AN+ G     +    +MSK  GESE  L K F  A E    AIIF+DE+D+ A  R+    E  RRI+S LL  +DG +Q   V+V+AATNR   +DPAL    RFD  +  G+PD   R EI   + K+
Sbjct:  238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387

HSP 2 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 65/221 (29.41%), Postives = 108/221 (48.87%), Query Frame = 3

Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE---ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQEYIE 695
            KF     + VLF GPPG GKT  A+ IAN+     + +    +++ ++GESE  + ++F  A +     ++F DE+DS A AR   + +   A  R+++ +L ++DG    K V +I ATNR   +DPA++   R D +I   LPD ++R  I     +                    SG D+ ++CQ+A +    + I  +I ++ E+   P   E  E
Sbjct:  505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEE 724

BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 68/151 (45.03%), Postives = 87/151 (57.62%), Query Frame = 3

Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 521
            PR +L  GPPGTGKT  AR +AN+ G     +    +MSK  GESE  L K F  A E    AIIF+DE+D+ A  R+    E  RRI+S LL  +DG +Q   V+V+AATNR   +DPAL    RFD  +  G+PD   R EI   + K+
Sbjct:  238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387

HSP 2 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 65/221 (29.41%), Postives = 108/221 (48.87%), Query Frame = 3

Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE---ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQEYIE 695
            KF     + VLF GPPG GKT  A+ IAN+     + +    +++ ++GESE  + ++F  A +     ++F DE+DS A AR   + +   A  R+++ +L ++DG    K V +I ATNR   +DPA++   R D +I   LPD ++R  I     +                    SG D+ ++CQ+A +    + I  +I ++ E+   P   E  E
Sbjct:  505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEE 724

BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TERA_DANRE (Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 68/151 (45.03%), Postives = 87/151 (57.62%), Query Frame = 3

Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 521
            PR +L  GPPGTGKT  AR +AN+ G     +    +MSK  GESE  L K F  A E    AIIF+DE+D+ A  R+    E  RRI+S LL  +DG +Q   V+V+AATNR   +DPAL    RFD  +  G+PD   R EI   + K+
Sbjct:  238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387

HSP 2 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 65/221 (29.41%), Postives = 108/221 (48.87%), Query Frame = 3

Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE---ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQEYIE 695
            KF     + VLF GPPG GKT  A+ IAN+     + +    +++ ++GESE  + ++F  A +     ++F DE+DS A AR   + +   A  R+++ +L ++DG    K V +I ATNR   +DPA++   R D +I   LPD ++R  I     +                    SG D+ ++CQ+A +    + I  +I ++ E+   P   E  E
Sbjct:  505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNVGDGGGAADRVINQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAMEVEE 724

BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TERA_BOVIN (Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 68/151 (45.03%), Postives = 87/151 (57.62%), Query Frame = 3

Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 521
            PR +L  GPPGTGKT  AR +AN+ G     +    +MSK  GESE  L K F  A E    AIIF+DE+D+ A  R+    E  RRI+S LL  +DG +Q   V+V+AATNR   +DPAL    RFD  +  G+PD   R EI   + K+
Sbjct:  238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387

HSP 2 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 65/221 (29.41%), Postives = 108/221 (48.87%), Query Frame = 3

Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE---ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQEYIE 695
            KF     + VLF GPPG GKT  A+ IAN+     + +    +++ ++GESE  + ++F  A +     ++F DE+DS A AR   + +   A  R+++ +L ++DG    K V +I ATNR   +DPA++   R D +I   LPD ++R  I     +                    SG D+ ++CQ+A +    + I  +I ++ E+   P   E  E
Sbjct:  505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEE 724

BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: CDAT_PLAF7 (Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate 3D7) GN=PF07_0047 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 66/163 (40.49%), Postives = 94/163 (57.67%), Query Frame = 3

Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500
            PE++  I +          P+ VL  G PGTGKTS A+ IAN++      +    +MSK+ GESE+ L K+F  A+E     IIF+DE+DS A  R    +E  +R++S LL  +DG +++  V+V+AATNR   +DPAL    RFD  I   +PD + R EI
Sbjct:  550 PEIFMSIGISA--------PKGVLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASE-KTPCIIFIDEIDSIANKRSKSNNELEKRVVSQLLTLMDGLKKNNNVLVLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEI 703

HSP 2 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 66/189 (34.92%), Postives = 98/189 (51.85%), Query Frame = 3

Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM-HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            KF SN  + +L  GPPG GKT  A+ IAN+     + V    +++ ++GESE  +  +F  A    +  IIF DE+DS A  R+S   ++A+ R+++ +L +IDG  + K + +IAATNR   LD AL    R D +I   LPD ++R  I     K+                   SG DI ++CQ A
Sbjct:  962 KFNSNYNKGILLYGPPGCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKA-RAASPCIIFFDEIDSLAKERNSNTNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVDIHDMAKRTEGFSGADITNLCQSA 1149

BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 75/186 (40.32%), Postives = 100/186 (53.76%), Query Frame = 3

Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI----AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+ VL  GPPGTGKT  AR IA+      + V    ++ KY GES RL+ ++F+ A E     IIF+DE+D+    R SE   A R   R L  LL Q+DGF+Q  KV +I ATNR   LDPAL+   R D  I   LP+ ++R EI    A+  AKH                +G D+R++C +A
Sbjct:  173 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYARE-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKH-GEIDYEAIVKLGEGFNGADLRNICTEA 356

BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 67/210 (31.90%), Postives = 104/210 (49.52%), Query Frame = 3

Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAK----HXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIR 635
            PEVY +  L          P  VL  GPPG GKT  A+ +A ++G   + + +  +M K+YGES +++  +FSLAN+L    IIF+DE+DSF   R S  HE T  + +  +   DG   + +V++I ATNR  D+D A + R        LP  + R +I +   K                     SG D++++C++A    A + I+
Sbjct:  114 PEVYSNSPL-------LQAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKL-QPCIIFIDEIDSFLRERSSTDHEVTATLKAEFMTLWDGLLNNGRVMIIGATNRINDIDDAFLRRLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKGFSGSDLKELCREAALDAAKEYIK 315

The following BLAST results are available for this feature:

BLAST of CN188561 vs. ExPASy Swiss-Prot

BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381


Match Name	E-value	Identity	Description
TERA_XENLA	3.591e-25	45.03	Transitional endoplasmic reticulum ATPase OS=Xenop...	[more]
TERA_RAT	4.690e-25	45.03	Transitional endoplasmic reticulum ATPase OS=Rattu...	[more]
TERA_PIG	4.690e-25	45.03	Transitional endoplasmic reticulum ATPase OS=Sus s...	[more]
TERA_MOUSE	4.690e-25	45.03	Transitional endoplasmic reticulum ATPase OS=Mus m...	[more]
TERA_HUMAN	4.690e-25	45.03	Transitional endoplasmic reticulum ATPase OS=Homo ...	[more]
TERA_DANRE	4.690e-25	45.03	Transitional endoplasmic reticulum ATPase OS=Danio...	[more]
TERA_BOVIN	4.690e-25	45.03	Transitional endoplasmic reticulum ATPase OS=Bos t...	[more]
CDAT_PLAF7	6.125e-25	40.49	Putative cell division cycle ATPase OS=Plasmodium ...	[more]
PS10B_ARATH	3.040e-24	40.32	26S protease regulatory subunit S10B homolog B OS=...	[more]
MSP1_YEAST	5.186e-24	31.90	Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC