CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS2_METJA (Putative 26S protease regulatory subunit homolog MJ1494 OS=Methanocaldococcus jannaschii GN=MJ1494 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 56/160 (35.00%), Postives = 95/160 (59.38%), Query Frame = 3
Query:   42 LETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAK 518
            LE    F    P+ VLF GPPGTGKT  AR +A +     + V    ++ ++ G++ +++ +++  A+E     I+F+DE+D+  ++R+ + +      +++ LL ++DG ++++ VV IAATN    LDPA+ SRF+  I F LP+ E R +I   YAK
Sbjct:  143 LENPKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRASESAP-CIVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNPAMLDPAIRSRFEEEIEFKLPNDEERLKIMELYAK 301          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 69/186 (37.10%), Postives = 94/186 (50.54%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI----AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+ VL  GPPGTGKT  AR IA+      + V    ++ KY GES R++ ++F  A +     +IF+DE+D+    R SE   A R   R L  LL Q+DGF+   KV +I ATNR   LDPAL+   R D  I   LP+   R ++    AA   KH                +  D+R+VC +A
Sbjct:  171 PKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYARD-HQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKH-GDVDYEAIAKLADGFNAADLRNVCTEA 354          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAT5_HUMAN (Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 58/147 (39.46%), Postives = 90/147 (61.22%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---EQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500
            PR VL  GPPGTGKT  AR +AN+ G  +  +    ++SK+YGE+E  L ++F+ A  L + +IIF+DE+D+    R+   +E  +R+++ LL  +DG      + +V+V+ ATNR   LD AL    RFD  I  G+P+ ++R +I
Sbjct:  387 PRGVLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEAT-LRHPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDI 532          

HSP 2 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 60/146 (41.10%), Postives = 87/146 (59.59%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ VL  GPPG  KT  A+ +AN++G+  + +    +M+KY GESER + + F  A  +   +IIF DE+D+ AV R S +       R+L+ LL ++DG EQ K V ++AATNR   +D AL+   R D +I   LPD   R+EI
Sbjct:  661 PKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVRETFRKARAVA-PSIIFFDELDALAVERGSSLGAGNVADRVLAQLLTEMDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREI 805          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500
            P+ +L  GPPG GKT  A+ +A ++ V    +    + SKY G+ E+L+  +F++A      +IIF+DE+DS    R S   EA+RR+ + +L Q DG     D++V+V+ ATNR +DLD A + R    I  GLP+ E R +I
Sbjct:  417 PKGLLLFGPPGNGKTMIAKAVAYESKVTFFSISSSSLTSKYVGDGEKLVRALFAVATHF-QPSIIFIDEIDSLLTERSSNESEASRRLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALRRLVKRIYVGLPELETRLQI 559          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 73/226 (32.30%), Postives = 109/226 (48.23%), Query Frame = 3
Query:   15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYA--KHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACL 671
            +PE+++ + +          P+ VL  GPPGTGKT  A+ +A +     + V    ++ K+ GE  +L+  VF LA E  +  IIF+DE+D+ A  R   +    R   R L  LL ++DGF+    V +IAATNR   LDPA++   RFD +I    PD + R EI   +    +               M G DI+ VC +A      +      TKD ++A L
Sbjct:  170 NPELFEKVGIVP--------PKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNIKSVDLREIAKMAENMVGADIKAVCTEAGMFAIREGREYVTTKDFKEALL 386          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS2_METTH (Putative 26S protease regulatory subunit homolog MTH_1011 OS=Methanobacterium thermoautotrophicum GN=MTH_1011 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 63/187 (33.69%), Postives = 100/187 (53.48%), Query Frame = 3
Query:   42 LETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAV-ARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRD 590
            LE   +F    PR VLF G PGTGKT  A+ +AN+  VPL  +    ++ ++ G+  R + +++ LA++    ++IF+DE+D+  +  R   +      +++ LL ++DG  Q+  VV I ATN  + LD A+ SRF+  I F LPD E R+ +  +Y +                   MSGRDI+D
Sbjct:  146 LEDPDRFRDWAPRNVLFHGSPGTGKTMLAKSLANELKVPLYLIKATSLIGEHVGDGARQIHELYELASKTA-PSVIFIDEMDAIGLDRRYQSLRGDVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDKAIRSRFEEEIEFKLPDDEERKLMLEKYIETMPLKVDFPVDKLVKLTREMSGRDIKD 331          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 63/167 (37.72%), Postives = 90/167 (53.89%), Query Frame = 3
Query:   15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            +PE++  + ++         P+ VL  GPPGTGKT  A+ +A   G   ++ P   ++ KY GES R++ ++F+ A E     IIF+DEVD+    R SE   A R   R L  LL Q+DGF+   +  +I ATNR   LDPAL+   R D  +   LP+   R EI
Sbjct:  203 NPEIFQRVGIKP--------PKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKE-HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEI 360          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491
            R +L  GPPG GKT  A+ +A ++      +    + SKY GE E+L+  +F++A EL   +IIF+DEVDS    R    H+A+RR+ +  L + DG +   D +V+V+ ATNR Q+LD A++ RF   +   LP+ E R
Sbjct:  341 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAREL-QPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETR 479          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491
            R +L  GPPG GKT  A+ +A ++      +    + SKY GE E+L+  +F++A EL   +IIF+DEVDS    R    H+A+RR+ +  L + DG +   D +V+V+ ATNR Q+LD A++ RF   +   LP+ E R
Sbjct:  374 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAREL-QPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETR 512          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491
            R +L  GPPG GKT  A+ +A ++      +    + SKY GE E+L+  +F++A EL   +IIF+DEVDS    R    H+A+RR+ +  L + DG +   D +V+V+ ATNR Q+LD A++ RF   +   LP+ E R
Sbjct:  376 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAREL-QPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETR 514          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PRS2_METJA3.146e-2135.00Putative 26S protease regulatory subunit homolog M... [more]
PRS10_DICDI3.146e-2137.1026S protease regulatory subunit S10B OS=Dictyostel... [more]
SPAT5_HUMAN4.109e-2139.46Spermatogenesis-associated protein 5 OS=Homo sapie... [more]
SPAST_DICDI4.109e-2138.89Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
PSMR_METVS4.109e-2132.30Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS2_METTH4.109e-2133.69Putative 26S protease regulatory subunit homolog M... [more]
PRS10_YEAST4.109e-2137.7226S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
SPAST_RAT5.366e-2139.29Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1[more]
SPAST_MOUSE5.366e-2139.29Spastin OS=Mus musculus GN=Spast PE=2 SV=3[more]
SPAST_HUMAN5.366e-2139.29Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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