CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 71/204 (34.80%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGFEQD--------KKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQ---EIAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKD 653
            + VL  GPPGTGKT  A+ +A + G     V    + SK+ GESER++  +F LA      + IF+DE+DS   +R  S  HE++RR+ S LL Q+DG            K V+V+AATN   D+D AL  R +  I   LPD E+R+    I  +  +                 SG D+ +VC+ A  +   + I G+ T+D
Sbjct:  273 KGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYA-PSTIFIDEIDSLCNSRGGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRKIAGK-TRD 474          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 70/198 (35.35%), Postives = 96/198 (48.48%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQE---IAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRG 638
            + VL  GPPGTGKT  A+ +A + G     V    + SKY GESE+L+  +F +A        IF+DE+DS    R  S+ HEA+RR+ S LL Q+DG        +  K V+V+AATN   D+D AL  R +  I   LP  + R E   I  +  +                 SG DI +VC+ A      + I G
Sbjct:  242 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRING 438          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 70/198 (35.35%), Postives = 96/198 (48.48%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQE---IAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRG 638
            + VL  GPPGTGKT  A+ +A + G     V    + SKY GESE+L+  +F +A        IF+DE+DS    R  S+ HEA+RR+ S LL Q+DG        +  K V+V+AATN   D+D AL  R +  I   LP  + R E   I  +  +                 SG DI +VC+ A      + I G
Sbjct:  242 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRING 438          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 70/198 (35.35%), Postives = 96/198 (48.48%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQE---IAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRG 638
            + VL  GPPGTGKT  A+ +A + G     V    + SKY GESE+L+  +F +A        IF+DE+DS    R  S+ HEA+RR+ S LL Q+DG        +  K V+V+AATN   D+D AL  R +  I   LP  + R E   I  +  +                 SG DI +VC+ A      + I G
Sbjct:  242 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRING 438          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPA5L_HUMAN (Spermatogenesis-associated protein 5-like protein 1 OS=Homo sapiens GN=SPATA5L1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 57/146 (39.04%), Postives = 83/146 (56.85%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPN--GAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500
            PR VL  GPPG GKT   + +A +AG  L+ V    +     GE+E  + +VF  A EL +   +++FLDE+D+    R S   E+  R+++ +L  +DG   D++VVV+ ATNR   LDPAL    RFD  +  G P  + R+EI
Sbjct:  234 PRGVLLAGPPGVGKTQLVQAVAREAGAELLAVSAPALQGSRPGETEENVRRVFQRARELASRGPSLLFLDEMDALCPQRGSRAPES--RVVAQVLTLLDGASGDREVVVVGATNRPDALDPALRRPGRFDREVVIGTPTLKQRKEI 377          

HSP 2 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 64/204 (31.37%), Postives = 96/204 (47.06%), Query Frame = 3
Query:   72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMH--EATRRILSVLLRQIDG-----------------FEQ--DKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            +P+ VL  GPPG  KT+  R +A       + V    + S + G+SE++L ++F  A      AI+FLDE+DS   AR +     +   R+LSVLL ++DG                 F++  ++ V++IAATNR   LD AL+   R D +I    PDH+ R  I     K                    SG D+R++C +A
Sbjct:  497 QPKGVLLYGPPGCAKTTLVRALATSCHCSFVSVSGADLFSPFVGDSEKVLSQIFRQA-RASTPAILFLDEIDSILGARSASKTGCDVQERVLSVLLNELDGVGLKTIERRGSKSSQQEFQEVFNRSVMIIAATNRPDVLDTALLRPGRLDKIIYIPPPDHKGRLSILKVCTKTMPIGPDVSLENLAAETCFFSGADLRNLCTEA 699          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 60/167 (35.93%), Postives = 93/167 (55.69%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            PE+Y+++ ++         P+ V+  G PGTGKT  A+ +ANQ     + V    ++ KY G+  RL+ ++F+ A E  + +I+F+DE+D+    R      A R   R +  LL Q+DGF+  ++ + VI ATNR  DLDPALI   R D  I F  PD   +++I
Sbjct:  214 PELYEEMGIKP--------PKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEE-HSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKI 371          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 69/198 (34.85%), Postives = 96/198 (48.48%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQAERSWASKIIRG 638
            + VL  GPPGTGKT  A+ +A +       V    + SKY GESE+L+  +F +A        IF+DE+DS    R  SE HEA+RR+ + LL Q+DG        +  K V+V+AATN   D+D AL  R +  I   LP  + R+E+     +                M   SG DI +VC+ A      + I G
Sbjct:  244 KGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLRELELADDVDLANIAEKMEGYSGADITNVCRDASLMAMRRRIEG 440          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 67/231 (29.00%), Postives = 110/231 (47.62%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXMS---GRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQE 686
            PE+++ + +E         P+ +L  GPPGTGKT  A+ +A +     + V    ++ K+ GE   L+  +F LA E    +IIF+DE+D+ A  R   +    R   R L  LL ++DGF+    V +I ATNR   LDPA++   RFD +I    PD + R EI   + +                     G +++ +C +A  + A + +R  +T D  +  +  + E
Sbjct:  193 PELFEKVGIEP--------PKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKE-KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMN-AIRELRDYVTMDDFRKAVEKIME 413          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NVL_MOUSE (Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 56/152 (36.84%), Postives = 86/152 (56.58%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLA-NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            P  +L  GPPG GKT  A+ +AN++G+  + V    +++ Y GESER + +VF  A N  P   +IF DEVD+    R      A+ R+++ LL ++DG E  ++V ++AATNR   +DPA++   R D  +  GLP   +R  I     K+
Sbjct:  614 PAGILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAP--CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKN 763          

HSP 2 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 61/167 (36.53%), Postives = 87/167 (52.10%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLA-NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ---DKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500
            PEVY  + +          PR VL  GPPG GKT  A  IA +  +P++ V    ++S   GESE+ L ++F  A +  P   I+F+DE+D+    R+    +  RRI++ LL  +D         +V+VI ATNR   LDPAL    RFD  +  G+PD   R+ I
Sbjct:  286 PEVYQHLGVVP--------PRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAP--CIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREVCLGIPDEAARERI 442          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NVL_HUMAN (Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 57/152 (37.50%), Postives = 86/152 (56.58%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLA-NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            P  VL  GPPG GKT  A+ +AN++G+  + V    +++ Y GESER + +VF  A N  P   +IF DEVD+    R      A+ R+++ LL ++DG E  ++V ++AATNR   +DPA++   R D  +  GLP   +R  I     K+
Sbjct:  615 PAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAP--CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKN 764          

HSP 2 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 63/167 (37.72%), Postives = 88/167 (52.69%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLA-NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ---DKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500
            PEVY  + +          PR VL  GPPG GKT  A  IA +  +P++ V    ++S   GESE+ L ++F  A +  P   IIF+DE+D+    R+    +  RRI++ LL  +D         +V+VI ATNR   LDPAL    RFD  I  G+PD  +R+ I
Sbjct:  287 PEVYHHLGVVP--------PRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAP--CIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERI 443          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
KTNA1_ARATH5.933e-2034.80Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
KATL1_PAPAN5.933e-2035.35Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_OTOGA5.933e-2035.35Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN5.933e-2035.35Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
SPA5L_HUMAN7.749e-2039.04Spermatogenesis-associated protein 5-like protein ... [more]
PRS4_SCHPO7.749e-2035.9326S protease regulatory subunit 4 homolog OS=Schiz... [more]
KTNA1_CHICK7.749e-2034.85Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
PSMR_METJA1.012e-1929.00Proteasome-activating nucleotidase OS=Methanocaldo... [more]
NVL_MOUSE1.012e-1936.84Nuclear valosin-containing protein-like OS=Mus mus... [more]
NVL_HUMAN1.012e-1937.50Nuclear valosin-containing protein-like OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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