CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 59/160 (36.88%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            K  +  P  VL EGPPGTGKT  A+ +A +AGVP   +     +  + G     +  +F  A +    AIIF+DE+D+    R   +   ++   + L+ LL ++DGFE ++ ++VIAATNR   LDPAL+   RFD  +  G PD + R+ I   +AK+
Sbjct:  214 KLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAA-PAIIFIDEIDAVGRQRGVGLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKN 372          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 59/160 (36.88%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            K  +  P  VL EGPPGTGKT  A+ +A +AGVP   +     +  + G     +  +F  A +    AIIF+DE+D+    R   +   ++   + L+ LL ++DGFE ++ ++VIAATNR   LDPAL+   RFD  +  G PD + R+ I   +AK+
Sbjct:  214 KLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAA-PAIIFIDEIDAVGRQRGVGLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKN 372          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ VL  GPPGTGKT  AR IA +AGVP            + G   R +  +FS A +  +  IIF+DE+D+   +R+ +  +  +  L+ +L ++DGF+Q++ ++V+AATN  + LD AL+   RFD  I    PD E R++I
Sbjct:  260 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKC-SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQI 402          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 60/147 (40.82%), Postives = 80/147 (54.42%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+  L  GPPGTGKT  AR  A Q     + +    ++  Y GE  +L+   F+LA E     IIF+DE+D+    R DSE       +R +  LL Q+DGF  D +V V+AATNR   LDPAL+   R D  I F LP  ++R +I
Sbjct:  215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKE-KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQI 360          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 69/198 (34.85%), Postives = 96/198 (48.48%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQE---IAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRG 638
            + VL  GPPGTGKT  A+ +A + G     V    + SKY GESE+L+  +F +A        IF+DE+DS    R  S+ HEA+RR+ S LL Q+DG        +  K V+V+AATN   D+D AL  R +  I   LP  + R +   I  +  +                 SG DI +VC+ A      + I G
Sbjct:  242 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRTDLLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRING 438          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ VL  GPPGTGKT  AR IA +AGVP            + G   R +  +F+ A +  +  IIF+DE+D+   +R+ +  +  +  L+ LL ++DGF+Q++ ++VIAATN  + LD AL+   RFD  I    PD E R++I
Sbjct:  263 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKR-SPCIIFMDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQI 405          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG--FEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500
            PR VL  GPPGTGKT  A+ IA+QA      +    + SK+ G++E+L+  +F++A      AIIF+DEVDS    R +  +E+T R+ +  L  +DG    ++ +V+VI ATNR Q+LD A+  RF   +   LP  E RQ+I
Sbjct:  283 PRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGDAEKLVKTLFAVA-AAHQPAIIFIDEVDSLLSKRSANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRLYVPLPTREARQKI 425          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 65/148 (43.92%), Postives = 79/148 (53.38%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFG-LPDHENRQEI 500
            PR VL  GPPGTGKT   + +AN      + V     + KY GE  R++  VF LA E    +IIF+DEVDS A  R    +      +RIL  LL Q+DGF+Q   V VI ATNR   LDPAL+   R D  I F  L D   R+ I
Sbjct:  206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARE-NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPYLRDRRERRLI 352          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 63/206 (30.58%), Postives = 105/206 (50.97%), Query Frame = 3
Query:   12 SSPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            ++PE+Y ++ ++         P+ V+  G PGTGKT  A+ +ANQ     + V    ++ +Y GE  +L+ ++F +A ++   +IIF+DE+D+    R    S      +R +  LL Q+DGF+    + VI ATN+ + LDPALI   R D  I FG+PD   +++I   +                     +SG DI+ +C +A
Sbjct:  190 TNPELYQEMGIKP--------PKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRVA-DMHAPSIIFIDEIDAIGGKRYNTSSGGRREVQRTMLELLNQLDGFDTRNDIKVIMATNKIEALDPALIRPGRIDRKIEFGMPDAATKKKIFDIHTSRMTLDESVNIELLITSKEDLSGADIKAICTEA 386          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS2_METTM (Putative 26S protease regulatory subunit homolog MTH1011 OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 60/187 (32.09%), Postives = 99/187 (52.94%), Query Frame = 3
Query:   42 LETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAV-ARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRD 590
            LE   +F    PR VLF G PGTGKT  A+ +AN+  VPL  +    ++ ++ G+  R + +++ LA++    ++IF+DE+D+  +  R   +      +++ LL ++DG  Q+  VV I ATN  + LD A+ SRF+  I F LP  + R+ +  +Y +                   MSGRDI++
Sbjct:  146 LEDPDRFRDWAPRNVLFHGSPGTGKTMLAKSLANELRVPLYLIKATSLIGEHVGDGARQIHELYELASKTA-PSVIFIDEMDAIGLDRRFQSLRGDVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDNAIRSRFEEEIEFKLPGDDERRMMLEKYIETMPLDVDFSVDKLVKLTKGMSGRDIKE 331          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
FTSH_STRR61.012e-1936.88Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN1.012e-1936.88Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH4_ARATH1.012e-1938.19Cell division protease ftsH homolog 4, mitochondri... [more]
PRS6A_YEAST1.322e-1940.8226S protease regulatory subunit 6A OS=Saccharomyce... [more]
KATL1_SORAR1.322e-1934.85Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
FTSH5_ORYSJ1.322e-1938.89Cell division protease ftsH homolog 5, mitochondri... [more]
FIGL1_DROME1.322e-1940.97Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
PRS6B_YEAST1.726e-1943.9226S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS4_ENCCU1.726e-1930.5826S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS2_METTM1.726e-1932.09Putative 26S protease regulatory subunit homolog M... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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