CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16 Identity = 57/187 (30.48%), Postives = 97/187 (51.87%), Query Frame = 3 Query: 69 NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 N P VL GPPGTGKT A+ +A+Q + + ++ K+ GE +L+ +F +A + A++F+DE+D+ A R DS+ +R + LL ++DGF++ + +IAATNR LD A++ RFD +I P+ R++I + + +SG D++ +C +A Sbjct: 181 NPPSGVLLHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD-HEPAVVFIDEIDAIASKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGREKIFRIHTRAMNVADSVDFGELAADTGDLSGADVKAICTEA 366
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX1_HUMAN (Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16 Identity = 58/166 (34.94%), Postives = 88/166 (53.01%), Query Frame = 3 Query: 9 ASSPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 A PE++ ++ + R +L GPPGTGKT A VIA ++ + + V ++SKY G SE+ + +F A + I+F DE +S A R + T R+++ LL Q+DG E + V V+AAT+R +DPAL+ R D + PD +R EI Sbjct: 860 AKYPELFANLPIRQRT--------GILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRDIFIRA-QAAKPCILFFDEFESIAPRRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEI 1016
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16 Identity = 65/212 (30.66%), Postives = 97/212 (45.75%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDS---EMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY---------AKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLP 674 + +L GPPGTGKT A+ +A + + ++SK+ G+SE+L+ +F LA + IFLDE++S R + HE +RR+ + LL Q+DG D V V+AA+N +LD A++ R + I LP E RQ + + + SG DIR VC++A KI E LP Sbjct: 292 KGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELA-RYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDLVFVLAASNLPWELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRKIFDALENHHSEHKNLP 502
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16 Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLA-NELPNGAIIFLDEVDSFAVARDS----EMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 P+ VL GPPGTGKT A+ +A +A VP + + + G + +F +A E P +IIF+DE+D+ +R + ++ + L+ LL ++DGF ++ V+V+AATNR + LDPAL+ RFD + PD + R EI + K Sbjct: 209 PKGVLLVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEMFVGLGASRVRDLFDIAKKEAP--SIIFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALLRPGRFDRQVLVDKPDFKGRVEILKVHIK 362
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16 Identity = 57/161 (35.40%), Postives = 82/161 (50.93%), Query Frame = 3 Query: 57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM----HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521 K P+ VL G PG GKT A+ IA +A VP + V + + G + +F A + IIF+DE+D+ AR + H+ + L+ LL ++DGF+ ++VIAATNR LDPAL+ RFD I PD R EI +A++ Sbjct: 182 KLGGRPPKGVLLYGEPGVGKTLLAKAIAGEAHVPFISVSGSDFVEMFVGVGAARVRDLFETAKKHAP-CIIFIDEIDAVGRARGAIPVGGGHDEREQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARN 341
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16 Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH 521 R +L GPPGTGK+ A+ +A +A + + ++SK+ GESE+L+ +F LA E +IIF+DE+DS +R EA RRI + L Q+ G D ++V+ ATN LD A+ RF+ I LP+ R AA + H Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHAR---AAMFRLH 313
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16 Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH 521 R +L GPPGTGK+ A+ +A +A + + ++SK+ GESE+L+ +F LA E +IIF+DE+DS +R EA RRI + L Q+ G D ++V+ ATN LD A+ RF+ I LP+ R AA + H Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHAR---AAMFKLH 313
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16 Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH 521 R +L GPPGTGK+ A+ +A +A + + ++SK+ GESE+L+ +F LA E +IIF+DE+DS +R EA RRI + L Q+ G D ++V+ ATN LD A+ RF+ I LP+ R AA + H Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHAR---AAMFKLH 313
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16 Identity = 55/155 (35.48%), Postives = 81/155 (52.26%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM----HEATRRILSVLLRQIDGFE-QDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 P+ VL GPPGTGKT A+ A +AGVP + + + G + +F A + I+F+DE+D+ +R S ++ + L+ LL ++DGF V+V+AATNR + LDPAL+ RFD + PD R +I YAK Sbjct: 207 PKGVLLVGPPGTGKTLLAKAAAGEAGVPFFIISGSEFVELFVGAGAARVRDLFEQAKK-QAPCIVFIDELDAIGKSRASGAFMGGNDEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKILEIYAK 360
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16 Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500 R +L GPPGTGK+ A+ +A +A + V +MSK+ GESE+L+ +F LA + +IIF+DEVDS +R+ EA RRI + L Q+ G + +V+ ATN LD A+ RF+ I LP+ R ++ Sbjct: 161 RGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQ-HKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQM 302 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |