CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 57/187 (30.48%), Postives = 97/187 (51.87%), Query Frame = 3
Query:   69 NRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEM--HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            N P  VL  GPPGTGKT  A+ +A+Q     + +    ++ K+ GE  +L+  +F +A +    A++F+DE+D+ A  R DS+       +R +  LL ++DGF++   + +IAATNR   LD A++   RFD +I    P+   R++I   + +                   +SG D++ +C +A
Sbjct:  181 NPPSGVLLHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD-HEPAVVFIDEIDAIASKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGREKIFRIHTRAMNVADSVDFGELAADTGDLSGADVKAICTEA 366          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX1_HUMAN (Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 58/166 (34.94%), Postives = 88/166 (53.01%), Query Frame = 3
Query:    9 ASSPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            A  PE++ ++ +  R          +L  GPPGTGKT  A VIA ++ +  + V    ++SKY G SE+ +  +F  A +     I+F DE +S A  R  +    T R+++ LL Q+DG E  + V V+AAT+R   +DPAL+   R D  +    PD  +R EI
Sbjct:  860 AKYPELFANLPIRQRT--------GILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRDIFIRA-QAAKPCILFFDEFESIAPRRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEI 1016          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 65/212 (30.66%), Postives = 97/212 (45.75%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDS---EMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY---------AKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLP 674
            + +L  GPPGTGKT  A+ +A +       +    ++SK+ G+SE+L+  +F LA      + IFLDE++S    R +     HE +RR+ + LL Q+DG    D  V V+AA+N   +LD A++ R +  I   LP  E RQ +   +          +                 SG DIR VC++A      KI         E   LP
Sbjct:  292 KGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELA-RYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDLVFVLAASNLPWELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRKIFDALENHHSEHKNLP 502          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLA-NELPNGAIIFLDEVDSFAVARDS----EMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+ VL  GPPGTGKT  A+ +A +A VP   +     +  + G     +  +F +A  E P  +IIF+DE+D+   +R +      ++   + L+ LL ++DGF  ++  V+V+AATNR + LDPAL+   RFD  +    PD + R EI   + K
Sbjct:  209 PKGVLLVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEMFVGLGASRVRDLFDIAKKEAP--SIIFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALLRPGRFDRQVLVDKPDFKGRVEILKVHIK 362          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 57/161 (35.40%), Postives = 82/161 (50.93%), Query Frame = 3
Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM----HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            K     P+ VL  G PG GKT  A+ IA +A VP + V     +  + G     +  +F  A +     IIF+DE+D+   AR +      H+   + L+ LL ++DGF+    ++VIAATNR   LDPAL+   RFD  I    PD   R EI   +A++
Sbjct:  182 KLGGRPPKGVLLYGEPGVGKTLLAKAIAGEAHVPFISVSGSDFVEMFVGVGAARVRDLFETAKKHAP-CIIFIDEIDAVGRARGAIPVGGGHDEREQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARN 341          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH 521
            R +L  GPPGTGK+  A+ +A +A     + +    ++SK+ GESE+L+  +F LA E    +IIF+DE+DS   +R     EA RRI +  L Q+ G   D   ++V+ ATN    LD A+  RF+  I   LP+   R   AA +  H
Sbjct:  168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHAR---AAMFRLH 313          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH 521
            R +L  GPPGTGK+  A+ +A +A     + +    ++SK+ GESE+L+  +F LA E    +IIF+DE+DS   +R     EA RRI +  L Q+ G   D   ++V+ ATN    LD A+  RF+  I   LP+   R   AA +  H
Sbjct:  168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHAR---AAMFKLH 313          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH 521
            R +L  GPPGTGK+  A+ +A +A     + +    ++SK+ GESE+L+  +F LA E    +IIF+DE+DS   +R     EA RRI +  L Q+ G   D   ++V+ ATN    LD A+  RF+  I   LP+   R   AA +  H
Sbjct:  168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHAR---AAMFKLH 313          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 55/155 (35.48%), Postives = 81/155 (52.26%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM----HEATRRILSVLLRQIDGFE-QDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+ VL  GPPGTGKT  A+  A +AGVP   +     +  + G     +  +F  A +     I+F+DE+D+   +R S      ++   + L+ LL ++DGF      V+V+AATNR + LDPAL+   RFD  +    PD   R +I   YAK
Sbjct:  207 PKGVLLVGPPGTGKTLLAKAAAGEAGVPFFIISGSEFVELFVGAGAARVRDLFEQAKK-QAPCIVFIDELDAIGKSRASGAFMGGNDEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKILEIYAK 360          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500
            R +L  GPPGTGK+  A+ +A +A     + V    +MSK+ GESE+L+  +F LA +    +IIF+DEVDS   +R+    EA RRI +  L Q+ G    +   +V+ ATN    LD A+  RF+  I   LP+   R ++
Sbjct:  161 RGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQ-HKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQM 302          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PSMR2_HALSA1.786e-1630.48Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PEX1_HUMAN1.786e-1634.94Peroxisome biogenesis factor 1 OS=Homo sapiens GN=... [more]
KATL2_XENTR1.786e-1630.66Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
FTSH_HELFE2.333e-1635.26Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_AQUAE3.047e-1635.40Cell division protease ftsH homolog OS=Aquifex aeo... [more]
VPS4B_MOUSE3.980e-1637.33Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_HUMAN3.980e-1637.33Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_BOVIN3.980e-1637.33Vacuolar protein sorting-associated protein 4B OS=... [more]
FTSH3_SYNY33.980e-1635.48Cell division protease ftsH homolog 3 OS=Synechocy... [more]
VPS4A_RAT5.198e-1637.76Vacuolar protein sorting-associated protein 4A OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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