CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 64/151 (42.38%), Postives = 85/151 (56.29%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 521
            P+ +L  GPPG+GKT  AR +AN+ G     +    +MSK  GESE  L K F  A E    +IIF+DE+DS A  R+    E  RRI+S LL  +DG +    V+V+ ATNR   +DPAL    RFD  I  G+PD   R E+   + K+
Sbjct:  242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEA-EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKN 391          

HSP 2 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 68/218 (31.19%), Postives = 110/218 (50.46%), Query Frame = 3
Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE---ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI---AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQE 686
            KF  +  + VLF GPPG GKT  A+ IAN+     + +    +++ ++GESE  + ++F  A +     ++F DE+DS A  R + + +   A  R+L+ LL ++DG    K V +I ATNR   +DPAL+   R D +I   LPD E+R +I     + +                  SG DI ++CQ++ +    + I   I K+ ++A  P   E
Sbjct:  509 KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEKERKRAESPEAME 725          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 64/151 (42.38%), Postives = 85/151 (56.29%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 521
            P+ +L  GPPG+GKT  AR +AN+ G     +    +MSK  GESE  L K F  A E    +IIF+DE+DS A  R+    E  RRI+S LL  +DG +    V+V+ ATNR   +DPAL    RFD  I  G+PD   R E+   + K+
Sbjct:  241 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEA-EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKN 390          

HSP 2 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 69/211 (32.70%), Postives = 103/211 (48.82%), Query Frame = 3
Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR----DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI---AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQ 662
            KF  +  + VLF GPPG GKT  A+ IAN+     + V    +++ ++GESE  + ++F  A +     ++F DE+DS A  R      +   A  R+L+ LL ++DG    K V +I ATNR   +D AL+   R D +I   LPD ++R  I   A + +                  SG DI ++CQ+A        IR  I KD E+
Sbjct:  508 KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGADITEICQRA----CKYAIRENIEKDIEK 713          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TERA1_CAEEL (Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 67/151 (44.37%), Postives = 84/151 (55.63%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 521
            PR +L  GPPGTGKT  AR +AN+ G     +    VMSK  GESE  L K F    E    AI+F+DE+D+ A  R+    E  RRI+S LL  +DG +    +VVIAATNR   +D AL    RFD  I  G+PD   R EI   + K+
Sbjct:  244 PRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEEC-EKNQPAILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKN 393          

HSP 2 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 62/196 (31.63%), Postives = 96/196 (48.98%), Query Frame = 3
Query:   45 ETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR----DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI---AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            E   KF     R VLF GPPG GKT  A+ IAN+     + +    +++ ++GESE  +  VF  A       ++F DE+DS A AR      +   A+ R+++ +L ++DG    K V +I ATNR   +DPA++   R D +I   LPD  +R +I   + +                    SG D+ ++CQ+A
Sbjct:  507 EKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAA-PCVLFFDELDSIAKARGGGAGGDGGGASDRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFSGADLTEICQRA 701          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 68/145 (46.90%), Postives = 81/145 (55.86%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494
            PR VL  GPPGTGKT  A+ +AN      + V     + KY GE  R++  VF LA E    AIIF+DEVD+ A AR      A R   RIL  LL Q+DGF+Q   V VI ATNR   LDPAL+   R D  I F LPD   ++
Sbjct:  189 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE-NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 332          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SAV_SULAC (Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 60/151 (39.74%), Postives = 91/151 (60.26%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 521
            P+ +L  GPPGTGKT  AR +AN+ G   + V    +MSK+YGESE+ + ++F  A E    +IIF+DE+D+ A  R+    E  +R+++ LL  +DG +   +V+VI ATNR   +DPAL    RFD  I    PD + R++I   + ++
Sbjct:  246 PKGILLYGPPGTGKTLLARALANEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEE-NAPSIIFIDEIDAIAPKREDVTGEVEKRVVAQLLTLMDGIKGRGRVIVIGATNRPDAIDPALRRPGRFDREIEIRPPDTKGRKDILQVHTRN 395          

HSP 2 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 62/152 (40.79%), Postives = 88/152 (57.89%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARD-SEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH 521
            P+ +L  GPPGTGKT  A+ +A ++G   + V    ++SK+ GESE+ + ++F  A +     +IF DE+DS A  R  S     T RI++ LL ++DG     KVV+IAATNR   LDPAL+   RFD +I    PD   R EI   + K+
Sbjct:  521 PKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAA-PTVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPLNKVVIIAATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKN 671          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 71/186 (38.17%), Postives = 98/186 (52.69%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI----AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+  L  GPPGTGKT  AR +A+Q     + V    ++ KY GES R++ ++F+ A +     I+F+DE+D+    R SE   A R   R L  LL Q+DGF+   KV VI ATNR   LDPAL+   R D  I  GLP+ ++R EI    + +  KH                S  D+R+VC +A
Sbjct:  184 PKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD-HQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKH-GEIDFEAVVKLSDGFSAADLRNVCTEA 367          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 58/142 (40.85%), Postives = 83/142 (58.45%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQ 494
            + +L  GPPG GKT  AR +A +       +    + SKY G+ E+L+  +F++A EL   +IIF+DEVDS    R S  HEATRR+ +  L Q DG     +  ++VV+AATNR Q+LD A + RF   +   LPD + R+
Sbjct:  537 KGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLVRALFAVAREL-QPSIIFIDEVDSVLSERSSNEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALRRFPKRVYVTLPDRDTRE 677          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 68/185 (36.76%), Postives = 92/185 (49.73%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+ VL  GPPGTGKT CAR +AN+     + V    ++ KY GE  R++  +F +A       IIF DEVD+   AR  +        +R +  L+ Q+DGF+    + V+ ATNR   LDPAL+   R D  + FGLPD E R  I   +AK                    +G DIR VC +A
Sbjct:  204 PKGVLMYGPPGTGKTLCARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARS-KKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEA 387          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 68/185 (36.76%), Postives = 95/185 (51.35%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENR---QEIAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+ VL  GPPGTGKT  AR +A+Q     + V    ++ KY GE  RL+ ++F LA +    +IIF+DE+D+    R+       R   R L  LL ++DGF+    V ++AATNR   LD AL+   RFD MI   LPDH+ R    +I  QY                   +G D+R +C +A
Sbjct:  187 PKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLAKQRA-PSIIFIDEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSEVSRLTEGKNGADLRAICMEA 370          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 65/184 (35.33%), Postives = 99/184 (53.80%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN-ELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE--QDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY---AKH-XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+ VL  GPPGTGKT   R +A+Q       +    + SK+ GE E+L+  +FS+A  +LP  ++IF+DE+DS   +R    HE++RRI +  L Q+DG     D++++V+ ATNR Q+LD A   RF   +   LP+ E+R +I        +H                 SG D+R +C +A
Sbjct:  349 PKGVLLFGPPGTGKTMIGRCVASQCKATFFNISASSLTSKWVGEGEKLVRALFSVARLKLP--SVIFIDEIDSLLSSRSESEHESSRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPESRTQIVQNLLVGTRHDITNHNLERIRELTDGYSGADMRQLCTEA 530          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
CD48D_ARATH3.361e-2342.38Cell division control protein 48 homolog D OS=Arab... [more]
CD48A_ARATH3.361e-2342.38Cell division control protein 48 homolog A OS=Arab... [more]
TERA1_CAEEL5.733e-2344.37Transitional endoplasmic reticulum ATPase homolog ... [more]
PRS6B_ARATH5.733e-2346.9026S protease regulatory subunit 6B homolog OS=Arab... [more]
SAV_SULAC7.488e-2339.74Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE... [more]
PRS10_CAEEL7.488e-2338.17Probable 26S protease regulatory subunit S10B OS=C... [more]
SPAST_ANOGA9.780e-2340.85Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
PRS7_DICDI9.780e-2336.7626S protease regulatory subunit 7 OS=Dictyostelium... [more]
PSMR_METMJ1.277e-2236.76Proteasome-activating nucleotidase OS=Methanoculle... [more]
FIGL1_CAEEL1.277e-2235.33Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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