CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500
            R +L  GPPGTGK+  A+ +A +A     + V    +MSK+ GESE+L+  +F LA +    +IIF+DEVDS   +R+    EA RRI +  L Q+ G    +   +V+ ATN    LD A+  RF+  I   LP+   R ++
Sbjct:  161 RGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQ-HKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQM 302          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500
            R +L  GPPGTGK+  A+ +A +A     + V    +MSK+ GESE+L+  +F LA +    +IIF+DEVDS   +R+    EA RRI +  L Q+ G    +   +V+ ATN    LD A+  RF+  I   LP+   R ++
Sbjct:  161 RGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQ-HKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQM 302          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 56/172 (32.56%), Postives = 88/172 (51.16%), Query Frame = 3
Query:    6 LASSPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYA 515
            +  SP  Y  I  + R +     P  +L  G PG GKT  A  I++   V  + +    ++ KY G+SE+ +  +FS A ++    ++F DE DS A  R  +    T R+++ +L Q+DG E    V ++AAT R   +DPAL+   R D +I   LP+ E R E+  + A
Sbjct:  621 IIESPVKYSLIYKQCRLRL----PTGILLFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRA-QMAKPCVLFFDEFDSVAPRRGQDSTGVTDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLA 787          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL2_HUMAN (Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 63/215 (29.30%), Postives = 102/215 (47.44%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVV-VIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI---------AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQ 683
            + +L  GPPGTGKT  A+ +A +       +    ++SK+ G+SE+L+  +F LA      + IFLDE++S    R +     HE + R+ + LL Q+DG  + + +V V+AA+N   +LD A++ R +  I   LP  E RQ +          ++  +                 SG DI+ VC++A      KI         E + LP +Q
Sbjct:  288 KGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELA-RYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRPVRKIFDALENHQSESSDLPRIQ 501          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMY-VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH 521
            R +L  GPPGTGK+  A+ +A +A     + +    ++SK+ GESE+L+  +F LA E    +IIF+DE+DS   +R     EA RRI +  L Q+ G   D   ++V+ ATN    LD A+  RF+  I   LP+   R   AA +  H
Sbjct:  168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMRGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHAR---AAMFKLH 313          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 53/152 (34.87%), Postives = 82/152 (53.95%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYA 515
            P+ VL  GPPGTGKT  A+ IA +A VP   +     +  + G     +  +F  A +     ++F+DE+D+    R + +   ++   + L+ LL ++DGFE +  V+VIAATNR   LD AL+   RFD  I   +PD ++R  I   +A
Sbjct:  187 PKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKQ-NAPCLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRVDVLDAALLRPGRFDRQIMVSMPDVKSRIAILKVHA 337          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_PENCH (Peroxisomal biogenesis factor 6 OS=Penicillium chrysogenum GN=pex6 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 61/187 (32.62%), Postives = 89/187 (47.59%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGF----EQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ-----EIAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            +LF GPPGTGKT  A+ IA +  +    V    +++ Y GESE  + +VF  A +     ++F DE+DS A  R ++        RI+S LL ++DG     E    V VI ATNR   LD AL+   RFD M+  G+ D   +Q      +  ++A H                +G D+  +C  A
Sbjct: 1066 ILFYGPPGTGKTLLAKAIATEFSLNFFSVKGPELLNMYIGESEANVRRVFQRARD-ARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMNGGEENSGGVFVIGATNRPDLLDTALLRPGRFDKMLYLGVSDTHRKQATILEALTRKFALHPDVSLDRVAEQLPLTYTGADLYALCSDA 1251          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 56/142 (39.44%), Postives = 76/142 (53.52%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGFEQD-KKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494
            +LF GPPGTGKT  A+ IA    +    V    +++ Y GESE  + +VF  A +     +IF DEVDS A  R ++        RI+S LL ++DG   D   V +I ATNR   LD AL+   RFD +I  G+ D   +Q
Sbjct:  754 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARD-AKPCVIFFDEVDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIYLGIADTREKQ 894          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+  L  GPPGTGKT  AR +A +AGVP         +  + G     +  +F  A       I+F+DE+D+    R + M   ++   + ++ LL ++DGF  +  V+V+AATNR   LD AL+   RFD  +T   PD   R +I   +++
Sbjct:  283 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSR 434          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_RAT (Peroxisome assembly factor 2 OS=Rattus norvegicus GN=Pex6 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 58/197 (29.44%), Postives = 92/197 (46.70%), Query Frame = 3
Query:   72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVA--RDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ-----EIAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIR 635
            R   +L  GPPGTGKT  A+ +A +  +  + V    +++ Y G+SE  + +VF+ A       IIF DE+DS A +  R  +      R++S LL ++DG    + V VI ATNR   LDPAL+   RFD ++  G  +    Q      I  ++                  ++G D+  +C  A  +   + +R
Sbjct:  734 RRSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAA-PCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVSLMNVLDCCPPQLTGADLYSLCSDAMMTALKRRVR 929          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
VPS4A_MOUSE5.198e-1637.76Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN5.198e-1637.76Vacuolar protein sorting-associated protein 4A OS=... [more]
PEX1_SCHPO5.198e-1632.56Peroxisomal ATPase pex1 OS=Schizosaccharomyces pom... [more]
KATL2_HUMAN5.198e-1629.30Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
VPS4B_PONAB6.788e-1637.33Vacuolar protein sorting-associated protein 4B OS=... [more]
FTSH_CYAME6.788e-1634.87Cell division protease ftsH homolog OS=Cyanidiosch... [more]
PEX6_PENCH8.866e-1632.62Peroxisomal biogenesis factor 6 OS=Penicillium chr... [more]
PEX6_CANGA8.866e-1639.44Peroxisomal biogenesis factor 6 OS=Candida glabrat... [more]
FTSH5_ARATH8.866e-1633.33Cell division protease ftsH homolog 5, chloroplast... [more]
PEX6_RAT1.158e-1529.44Peroxisome assembly factor 2 OS=Rattus norvegicus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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