CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_MOUSE (Peroxisome assembly factor 2 OS=Mus musculus GN=Pex6 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 58/197 (29.44%), Postives = 92/197 (46.70%), Query Frame = 3
Query:   72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVA--RDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ-----EIAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIR 635
            R   +L  GPPGTGKT  A+ +A +  +  + V    +++ Y G+SE  + +VF+ A       IIF DE+DS A +  R  +      R++S LL ++DG    + V VI ATNR   LDPAL+   RFD ++  G  +    Q      I  ++                  ++G D+  +C  A  +   + +R
Sbjct:  737 RRSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAA-PCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVSLANVLDCCPPQLTGADLYSLCSDAMMTALKRRVR 932          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_GLOLA (Peroxisomal biogenesis factor 6 OS=Glomerella lagenarium GN=PEX6 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 55/145 (37.93%), Postives = 79/145 (54.48%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGF----EQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494
            +LF GPPGTGKT  A+ IA +  +    V    +++ Y GESE  + +VF  A +     ++F DE+DS A  R ++        RI+S LL ++DG     +    V VI ATNR   LDPAL+   RFD M+  G+ D  ++Q
Sbjct: 1030 ILFYGPPGTGKTLLAKAIATEYSLNFFSVKGPELLNMYIGESEANVRRVFQRARD-ARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGDDTSGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQ 1173          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+  L  GPPGTGKT  AR +A +AGVP         +  + G     +  +F  A       I+F+DE+D+    R + M   ++   + ++ LL ++DGF  +  V+V+AATNR   LD AL+   RFD  +T   PD   R +I   +++
Sbjct:  295 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR 446          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 55/145 (37.93%), Postives = 79/145 (54.48%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGFEQDK----KVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494
            +LF GPPGTGKT  A+ IA +  +    V    +++ Y GESE  + +VF  A +     ++F DE+DS A  R ++        RI+S LL ++DG    +     V VI ATNR   LDPAL+   RFD M+  G+ D  ++Q
Sbjct: 1027 ILFYGPPGTGKTLLAKAIATEYSLNFFSVKGPELLNMYIGESEANVRRVFQRARD-ARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGEGGGGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQ 1170          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+  L  GPPGTGKT  AR +A +AGVP         +  + G     +  +F  A       I+F+DE+D+    R + M   ++   + ++ LL ++DGF  +  V+V+AATNR   LD AL+   RFD  +T   PD   R +I   +++
Sbjct:  286 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRIKILQVHSR 437          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_RICBR (Cell division protease ftsH homolog OS=Rickettsia bellii (strain RML369-C) GN=ftsH PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+  L  GPPGTGKT  A+ IA +A VP   +     +  + G     +  +F    +     IIF+DE+D+    R   M   ++   + L+ +L ++DGFE ++ VV+IAATNR   LD AL+   RFD  IT   PD + R++I   + K
Sbjct:  188 PKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFE-QGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDNALLRPGRFDRQITVSNPDIDGREKILQVHLK 339          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_HUMAN (Peroxisome assembly factor 2 OS=Homo sapiens GN=PEX6 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 51/137 (37.23%), Postives = 75/137 (54.74%), Query Frame = 3
Query:   72 RPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVA--RDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFG 470
            R   +L  GPPGTGKT  A+ +A +  +  + V    +++ Y G+SE  + +VF+ A       IIF DE+DS A +  R  +      R++S LL ++DG    + V VI ATNR   LDPAL+   RFD ++  G
Sbjct:  736 RRSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAA-PCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVG 871          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 58/162 (35.80%), Postives = 83/162 (51.23%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR--DSEMHEATRRILSVLLRQIDGFEQ---------DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQ---EIAAQYAKH 521
            R +L  GPPGTGKT  AR +A ++      +    + SK+ GESE+L+  +F+LA +L + +IIF+DE+DS   AR  D   HE +RRI +  L Q     +           +V+V+AATN    +D A   RF       LPD   R+       +Y KH
Sbjct:  493 RGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKL-SPSIIFVDEIDSLLSARSSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARRRFVRRTYIPLPDETTRRLHLNNLLKYQKH 653          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 53/155 (34.19%), Postives = 83/155 (53.55%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDS----EMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+ VL  GPPGTGKT  A+ +A +A VP   +     +  + G     +  +F  A +    +IIF+DE+D+   +R +      ++   + L+ LL ++DGF  ++  V+V+AATNR + LDPAL+   RFD  +    PD   R EI   + K
Sbjct:  203 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKK-QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 356          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 53/155 (34.19%), Postives = 83/155 (53.55%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDS----EMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+ VL  GPPGTGKT  A+ +A +A VP   +     +  + G     +  +F  A +    +IIF+DE+D+   +R +      ++   + L+ LL ++DGF  ++  V+V+AATNR + LDPAL+   RFD  +    PD   R EI   + K
Sbjct:  203 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKK-QAPSIIFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 356          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PEX6_MOUSE1.158e-1529.44Peroxisome assembly factor 2 OS=Mus musculus GN=Pe... [more]
PEX6_GLOLA1.158e-1537.93Peroxisomal biogenesis factor 6 OS=Glomerella lage... [more]
FTSH1_ARATH1.158e-1533.33Cell division protease ftsH homolog 1, chloroplast... [more]
PEX6_NEUCR1.512e-1537.93Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
FTSH_TOBAC1.512e-1533.33Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_RICBR1.512e-1535.29Cell division protease ftsH homolog OS=Rickettsia ... [more]
PEX6_HUMAN1.975e-1537.23Peroxisome assembly factor 2 OS=Homo sapiens GN=PE... [more]
YKX4_SCHPO2.580e-1535.80Uncharacterized AAA domain-containing protein C328... [more]
FTSH_HELPY2.580e-1534.19Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELPJ2.580e-1534.19Cell division protease ftsH homolog OS=Helicobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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