CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+ VL  GPPGTGKT  A+ IA +A  P   +     +  + G     +  +F  A E     I+F+DE+D+    R   +   ++   + L+ LL ++DGF  D  V+V+AATNR   LD AL+   RFD  I   LP+   R  I   ++K
Sbjct:  204 PKGVLLVGPPGTGKTLLAKAIAGEASAPFFSISGSEFVEMFVGVGASRVRDLFKKAKE-KAPCIVFIDEIDAVGRQRGVGIGGGNDEREQTLNQLLTEMDGFSGDTGVIVVAATNRIDVLDSALLRPGRFDRQIMVSLPNINGRLAILKVHSK 355          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SAP1_YEAST (Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 55/159 (34.59%), Postives = 85/159 (53.46%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQ--------------------IDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491
            R +L  GPPGTGKT  AR +A ++      +    + SKY GESE+L+  +F++A +L + +IIF+DE+DS   +R++E  +E++RRI +  L Q                     +G E D +V+V+AATN    +D A   RF       LP+ + R
Sbjct:  639 RGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLVRALFAIAKKL-SPSIIFVDEIDSIMGSRNNENENESSRRIKNEFLVQWSSLSSAAAGSNKSNTNNSDTNGDEDDTRVLVLAATNLPWSIDEAARRRFVRRQYIPLPEDQTR 796          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   72 RPRA-VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR--DSEMHEATRRILSVLLRQIDGFEQD--KKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHE 485
            +PR+ VL  GPPGTGKT  A+ +A +  +  + +    +++ Y GESE  +  VF  A    +  +IF DE+DS A  R   S+      R++S LL ++D   +D  K V VI ATNR   LDP+L+   RFD ++  G+   E
Sbjct:  686 KPRSGVLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARN-SSPCVIFFDELDSIAPHRGNSSDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSE 829          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_KLULA (Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis GN=PEX6 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGFEQ-DKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494
            +LF GPPGTGKT  A+ IA+   +    V    +++ Y GESE  + +VF  A +     +IF DE+DS A  R ++        RI+S LL ++DG       V VI ATNR   LD AL+   RFD M+  G+ D + +Q
Sbjct:  738 ILFYGPPGTGKTLLAKAIASNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARD-AKPCVIFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSSGGDGVFVIGATNRPDLLDEALLRPGRFDKMLYLGISDTDKKQ 878          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 63/215 (29.30%), Postives = 99/215 (46.05%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVV-VIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY---------AKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQ 683
            + +L  GPPGTGKT  A+ +A +       +    ++SK+ G+SE+L+  +F LA      + IFLDE++S    R       HE + R+ + LL Q+DG  + + +V V+AA+N   +LD A++ R +  I   LP  E RQ +   +          +                 SG DI+ VC++A      KI         E   LP +Q
Sbjct:  289 KGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELA-RYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSVLSQETEGYSGSDIKLVCREAAMRPVRKIFSVLENNQSESNNLPGIQ 502          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+  L  GPPGTGKT  AR +A +AGVP         +  + G     +  +F  A +     I+F+DE+D+    R + +   ++   + ++ LL ++DGF  +  V+V+AATNR   LD AL+   RFD  +T   PD   R +I   +++
Sbjct:  265 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKA-KAKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFAGNSGVIVLAATNRPDVLDAALLRPGRFDRQVTVDRPDVAGRVKILEVHSR 416          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 57/164 (34.76%), Postives = 83/164 (50.61%), Query Frame = 3
Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSF--------AVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            K  +  PR  +  GPPGTGKT  A+  A +A VP + V     +  + G     +  +F+ A  +   +IIF+DE+D+         A+   ++  EAT   L+ LL ++DGF    +VVV+A TNR   LD AL+   RFD  I    PD   RQ+I   + K
Sbjct:  315 KLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMA-PSIIFIDEIDAIGKERGKGGALGGANDEREAT---LNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDVNGRQQIYLVHLK 474          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_YARLI (Peroxisomal biogenesis factor 6 OS=Yarrowia lipolytica GN=PEX6 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 56/146 (38.36%), Postives = 79/146 (54.11%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPD-HENRQEI 500
            +LF GPPGTGKT  A+ IA    +    V    +++ Y GESE  + +VF  A +     ++F DE+DS A  R ++        RI+S LL ++DG      + V V+ ATNR   LD AL+   RFD M+  G+ D HE +Q I
Sbjct:  755 ILFYGPPGTGKTLLAKAIATTFSLNFFSVKGPELLNMYIGESEANVRRVFQKARD-AKPCVVFFDELDSVAPQRGNQGDSGGVMDRIVSQLLAELDGMSTAGGEGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTHEKQQTI 899          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 60/209 (28.71%), Postives = 93/209 (44.50%), Query Frame = 3
Query:   15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM-------SGRDIRDVCQQA 605
            +P+ Y D+  +         P+  +  GPPGTGKT  A+  A +A VP + V     +  + G     +  +F+LA +     I+F+DE+D+    R   +          L+ LL ++DGF     VV++A TNR   LDPAL+   RFD  I  G PD + R  I   + +                +       SG D+ +VC +A
Sbjct:  328 NPKQYQDLGAKI--------PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARK-NAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEA 527          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 60/209 (28.71%), Postives = 93/209 (44.50%), Query Frame = 3
Query:   15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM-------SGRDIRDVCQQA 605
            +P+ Y D+  +         P+  +  GPPGTGKT  A+  A +A VP + V     +  + G     +  +F+LA +     I+F+DE+D+    R   +          L+ LL ++DGF     VV++A TNR   LDPAL+   RFD  I  G PD + R  I   + +                +       SG D+ +VC +A
Sbjct:  329 NPKQYQDLGAKI--------PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARK-NAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEA 528          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
FTSH_CYACA2.580e-1534.64Cell division protease ftsH homolog OS=Cyanidium c... [more]
SAP1_YEAST3.369e-1534.59Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 P... [more]
PEX6_SCHPO3.369e-1537.24Peroxisomal ATPase pex6 OS=Schizosaccharomyces pom... [more]
PEX6_KLULA3.369e-1538.73Peroxisomal biogenesis factor 6 OS=Kluyveromyces l... [more]
KATL2_MOUSE3.369e-1529.30Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
FTSH1_ORYSJ3.369e-1532.68Cell division protease ftsH homolog 1, chloroplast... [more]
AFG3_YEAST3.369e-1534.76Mitochondrial respiratory chain complexes assembly... [more]
PEX6_YARLI4.400e-1538.36Peroxisomal biogenesis factor 6 OS=Yarrowia lipoly... [more]
AFG32_MOUSE4.400e-1528.71AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
AFG32_HUMAN4.400e-1528.71AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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