CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 56/147 (38.10%), Postives = 78/147 (53.06%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR--DSEMHEATRRILSVLLRQIDGF---EQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPD-HENRQEI 500
            +LF GPPGTGKT  A+ IA    +    V    +++ Y GESE  + KVF  A +     ++F DE+DS A  R    +      RI+S LL ++DG    +    V V+ ATNR   LD AL+   RFD M+  G+ D HE + +I
Sbjct:  855 ILFYGPPGTGKTLLAKAIATNFALNFFSVKGPELLNMYIGESEANVRKVFQRARD-AKPCVVFFDELDSVAPKRGNQGDSEGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKI 1000          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 57/147 (38.78%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGF---EQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPD-HENRQEI 500
            +LF GPPGTGKT  A+ IA    +    V    +++ Y GESE  + +VF  A +     +IF DE+DS A  R ++        RI+S LL ++DG    E    V V+ ATNR   LD AL+   RFD M+  G+ D HE + +I
Sbjct:  849 ILFYGPPGTGKTLLAKAIATNFALNFFSVKGPELLNMYIGESEANVRRVFQKARD-AKPCVIFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQAKI 994          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 60/209 (28.71%), Postives = 93/209 (44.50%), Query Frame = 3
Query:   15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM-------SGRDIRDVCQQA 605
            +P+ Y D+  +         P+  +  GPPGTGKT  A+  A +A VP + V     +  + G     +  +F+LA +     I+F+DE+D+    R   +          L+ LL ++DGF     VV++A TNR   LDPAL+   RFD  I  G PD + R  I   + +                +       SG D+ +VC +A
Sbjct:  330 NPKQYQDLGAKI--------PKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARK-NAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEA 529          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_DICDI (Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 47/141 (33.33%), Postives = 79/141 (56.03%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR--DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494
            +L  GPPGTGKT  A+ IA +  +  + V    +++ Y GESE+ + ++F+ A +     +IF DE+DS A +R   ++      R++S LL ++DG ++   V +I ATNR   LD +L+   R D ++  G+   +  Q
Sbjct:  955 ILLFGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEKNIREIFNKARQ-AKPCVIFFDELDSLAPSRGNGADSGGVMDRVVSQLLAELDGMQKSSDVFIIGATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQ 1094          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 57/196 (29.08%), Postives = 94/196 (47.96%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIRGQITKDGEQA 665
            +L  G PG GKT  A  +A Q G+  + +    +++KY G SE+ + ++F  A +     I+F DE DS A  R  +    T R+++ +L Q+DG E    V V+AAT+R   +D AL+   R D  +   +PD ++R +I     ++                SG    D+   A  ++  K +  ++TKD   A
Sbjct:  836 ILLYGYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERA-QAAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQMLTQMDGAEGLDGVYVLAATSRPDLIDSALLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKSVNLSSVAGECSGFSGADLQALAYNAYL-KAVHEKLTKDESMA 1029          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 53/153 (34.64%), Postives = 79/153 (51.63%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+  L  GPPGTGKT  A+ IA +A VP   +     +  + G     +  +F    +     IIF+DE+D+    R   M   ++   + L+ +L ++DGFE ++ VV+IAATNR   LD AL+   RFD  I    PD   R++I   + K
Sbjct:  188 PKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFE-QGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLK 339          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 53/153 (34.64%), Postives = 79/153 (51.63%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+  L  GPPGTGKT  A+ IA +A VP   +     +  + G     +  +F    +     IIF+DE+D+    R   M   ++   + L+ +L ++DGFE ++ VV+IAATNR   LD AL+   RFD  I    PD   R++I   + K
Sbjct:  188 PKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFE-QGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLK 339          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 53/153 (34.64%), Postives = 79/153 (51.63%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+  L  GPPGTGKT  A+ IA +A VP   +     +  + G     +  +F    +     IIF+DE+D+    R   M   ++   + L+ +L ++DGFE ++ VV+IAATNR   LD AL+   RFD  I    PD   R++I   + K
Sbjct:  188 PKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFE-QGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLK 339          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 53/153 (34.64%), Postives = 79/153 (51.63%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+  L  GPPGTGKT  A+ IA +A VP   +     +  + G     +  +F    +     IIF+DE+D+    R   M   ++   + L+ +L ++DGFE ++ VV+IAATNR   LD AL+   RFD  I    PD   R++I   + K
Sbjct:  188 PKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFE-QGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLK 339          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 49/153 (32.03%), Postives = 78/153 (50.98%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+  L  GPPGTGKT  AR +A +AG P         +  + G     +  +F  A       I+F+DE+D+    R + +   ++   + ++ LL ++DGF  +  V+V+AATNR   LD AL+   RFD  +T   PD   R +I   +++
Sbjct:  286 PKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSR 437          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PEX6_PICPA5.747e-1538.10Peroxisomal biogenesis factor 6 OS=Pichia pastoris... [more]
PEX6_PICAN5.747e-1538.78Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]
AFG32_BOVIN5.747e-1528.71AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
PEX6_DICDI7.505e-1533.33Peroxisomal biogenesis factor 6 OS=Dictyostelium d... [more]
PEX1_PICPA7.505e-1529.08Peroxisome biosynthesis protein PAS1 OS=Pichia pas... [more]
FTSH_RICTY7.505e-1534.64Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICPR7.505e-1534.64Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICFE7.505e-1534.64Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICCN7.505e-1534.64Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_MEDSA7.505e-1532.03Cell division protease ftsH homolog, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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