CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX1_DICDI (Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 50/141 (35.46%), Postives = 75/141 (53.19%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            +L  GP G GKT  A  IA + G+  + V    +++KY G SE+ +  VFS A+      ++F DE DS A  R  +    T R+++  L Q+DG E    V V+AAT+R   +DPAL+   R D  +   +P+   R +I
Sbjct:  903 ILLYGPTGCGKTLLASAIAGECGLNFISVKGPELLNKYIGSSEQGVRDVFSRASSA-KPCVLFFDEFDSIAPRRGHDNSGVTDRVVNQFLTQLDGVEGLTGVYVLAATSRPDLIDPALLRPGRLDKSLYCNIPEFNERLDI 1042          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 49/153 (32.03%), Postives = 78/153 (50.98%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+  L  GPPGTGKT  AR +A +AGVP         +  + G     +  +F  A       I+F+DE+D+    R + +   ++   + ++ LL ++DGF  +  V+V+AATNR   LD AL+   +FD  +T   PD   R  I   +++
Sbjct:  263 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRHLFENAKS-KAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGKFDRQVTVDRPDVAGRVRILQVHSR 414          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 48/151 (31.79%), Postives = 79/151 (52.32%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARD-SEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            P+ VL  GPPG GKT  A+ ++ +A VP +Y           G     + ++F+ A +  +  ++F+DE+DS    R  S  H    + ++ LL ++DGF+  + ++V+ ATN+ + LD AL+   RFD  I    P +E R  +   Y K
Sbjct:  199 PKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQ-NSPCLVFIDEIDSVGGNRTFSPHHPFANQTINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLK 348          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_DEBHA (Peroxisomal biogenesis factor 6 OS=Debaryomyces hansenii GN=PEX6 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 54/146 (36.99%), Postives = 77/146 (52.74%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGFEQDKK-----VVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494
            +LF GPPGTGKT  A+ IA    +    V    +++ Y GESE  + +VF  A +     +IF DE+DS A  R ++        RI+S LL ++DG     +     V V+ ATNR   LD AL+   RFD M+  G+ D + +Q
Sbjct:  875 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARD-AKPCVIFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGAEGGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTDEKQ 1019          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 53/167 (31.74%), Postives = 79/167 (47.31%), Query Frame = 3
Query:   15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            +P+ Y D+  +         P+  +  GPPGTGKT  A+  A +A VP + V     +  + G     +  +F++A +     I+F+DE+D+    R              L+ +L ++DGF     VVV+A TNR   LDPAL    RFD  I  G PD + R  I
Sbjct:  321 NPKQYQDLGAKI--------PKGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEMFVGVGPARVRDMFAMARK-HAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSSTNVVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSI 478          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: MPA_RHOER (Proteasome-associated ATPase OS=Rhodococcus erythropolis GN=mpa PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 53/167 (31.74%), Postives = 85/167 (50.90%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPL---------------MYVPLEVVMSKYYGESERLLGKVFSLANELPNGA---IIFLDEVDSFAVARDSEMH-EATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQY 512
            P+ VL  GPPG GKT  A+ +AN     +               + +    +++K+ GE+ER +  +F  A E  +     I+F DE+DS    R S +  +    ++  LL +IDG E  + V+VI A+NR+  +DPA++   R D  I    PD E+ Q+I ++Y
Sbjct:  268 PKGVLLYGPPGCGKTLIAKAVANSLAKKIAEARGQDSKDAKSYFLNIKGPELLNKFVGETERHIRMIFQRAREKASEGTPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAESAQDIFSKY 434          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGN_MOUSE (Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 51/183 (27.87%), Postives = 88/183 (48.09%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF--EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            PR++L  GP GTGKT   R IA+Q G     +    +++K+ GE+E+++   F +A      ++IF+ ++D    ++ SE H    R+ +  L Q+D      + ++VVI AT++ +++D +L   F   +   LPD   R +I  Q                        SG D+  +CQ+A
Sbjct:  519 PRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWIGEAEKIIHASFLVA-RCRQPSVIFVSDIDMLLSSQVSEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMKRLLIPLPDSTARHQIIVQLLTQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEA 700          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX6_ASHGO (Peroxisomal biogenesis factor 6 OS=Ashbya gossypii GN=PEX6 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 52/142 (36.62%), Postives = 75/142 (52.82%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE--ATRRILSVLLRQIDGFEQ-DKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQ 494
            +LF GPPGTGKT  A+ +A    +    V    +++ Y GESE  + +VF  A +     +IF DE+DS A  R ++        RI+S LL ++DG       + VI ATNR   LD AL+   RFD ++  G+ D   +Q
Sbjct:  759 ILFYGPPGTGKTLLAKAVATNFSLNFFSVKGPELLNMYIGESEANVRRVFQRARD-AKPCVIFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGLSTGGDGLFVIGATNRPDLLDEALLRPGRFDKLLYLGISDTNEKQ 899          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGN_HUMAN (Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 50/183 (27.32%), Postives = 88/183 (48.09%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF--EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            PR++L  GP GTGKT   R IA+Q G     +    +++K+ GE+E+++   F +A      ++IF+ ++D    ++ +E H    R+ +  L Q+D      + ++VVI AT++ +++D +L   F   +   LPD   R +I  Q                        SG D+  +CQ+A
Sbjct:  519 PRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVA-RCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMKRLLIPLPDSTARHQIIVQLLSQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEA 700          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SUR2_SCHPO (Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARD--SEMHEATRRILSVLLRQ---IDGFEQDK------KVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491
            + +L  GPPGTGKT  AR +A +A      +    + SKY G+SE+L+  +F +A      ++IF+DE+DS   AR+     HE++RR+ +  L Q   +     DK      +V+V+AATN    +D A   RF       LP+ E R
Sbjct:  413 QGMLLFGPPGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKR-QTCSVIFVDEIDSILSARNDSGNEHESSRRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATNLPWCIDEAARRRFVKRTYIPLPEKETR 560          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PEX1_DICDI9.802e-1535.46Peroxisome biogenesis factor 1 OS=Dictyostelium di... [more]
FTSH_CAPAN9.802e-1532.03Cell division protease ftsH homolog, chloroplastic... [more]
YME1_SCHMA1.280e-1431.79Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
PEX6_DEBHA1.280e-1436.99Peroxisomal biogenesis factor 6 OS=Debaryomyces ha... [more]
AFG31_MOUSE1.672e-1431.74AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
MPA_RHOER2.184e-1431.74Proteasome-associated ATPase OS=Rhodococcus erythr... [more]
FIGN_MOUSE3.725e-1427.87Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1[more]
PEX6_ASHGO6.354e-1436.62Peroxisomal biogenesis factor 6 OS=Ashbya gossypii... [more]
FIGN_HUMAN6.354e-1427.32Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2[more]
SUR2_SCHPO1.084e-1334.90Protein sur2 OS=Schizosaccharomyces pombe GN=sur2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
back to top