CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PEX1_YEAST (Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae GN=PEX1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 51/163 (31.29%), Postives = 81/163 (49.69%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P  Y+ I +    +  S     +L  G PG GKT  A  +A Q G+  + V    +++K+ G SE+ + ++F  A  +    I+F DE DS A  R  +    T R+++ LL Q+DG E    V ++AAT+R   +D AL+   R D  +   +P    R +I
Sbjct:  716 PTKYEPIFVNCPLRLRSG----ILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEILNKFIGASEQNIRELFERAQSV-KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTQMDGAEGLDGVYILAATSRPDLIDSALLRPGRLDKSVICNIPTESERLDI 873          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: MPA_MYCTU (Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 53/167 (31.74%), Postives = 85/167 (50.90%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIAN---------------QAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGA---IIFLDEVDSFAVARDSEMH-EATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQY 512
            P+ VL  GPPG GKT  A+ +AN               +A    + +    +++K+ GE+ER +  +F  A E  +     I+F DE+DS    R + +  +    ++  LL +IDG E  + V+VI A+NR+  +DPA++   R D  I    PD E  Q+I ++Y
Sbjct:  286 PKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAHEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTRGTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDIYSKY 452          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: MPA_MYCLE (Proteasome-associated ATPase OS=Mycobacterium leprae GN=mpa PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 53/167 (31.74%), Postives = 85/167 (50.90%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIAN---------------QAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGA---IIFLDEVDSFAVARDSEMH-EATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQY 512
            P+ VL  GPPG GKT  A+ +AN               +A    + +    +++K+ GE+ER +  +F  A E  +     I+F DE+DS    R + +  +    ++  LL +IDG E  + V+VI A+NR+  +DPA++   R D  I    PD E  Q+I ++Y
Sbjct:  286 PKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAREAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTRGTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDIYSKY 452          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: MPA_MYCBO (Proteasome-associated ATPase OS=Mycobacterium bovis GN=mpa PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 53/167 (31.74%), Postives = 85/167 (50.90%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIAN---------------QAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGA---IIFLDEVDSFAVARDSEMH-EATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQY 512
            P+ VL  GPPG GKT  A+ +AN               +A    + +    +++K+ GE+ER +  +F  A E  +     I+F DE+DS    R + +  +    ++  LL +IDG E  + V+VI A+NR+  +DPA++   R D  I    PD E  Q+I ++Y
Sbjct:  286 PKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAHEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTRGTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDIYSKY 452          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 50/183 (27.32%), Postives = 90/183 (49.18%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF--EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            PR++L  GP GTG+T   R +A+Q G   + +    +++K+ GE E+++   F +A      +++F+ +VD    ++ SE      RI S LL Q+DG     ++ V+V+ +T++ +++D +L   F   +   LPD   R +I +Q                        SG D+  +CQ+A
Sbjct:  497 PRSILLFGPQGTGRTLLGRCMASQLGAAFLLLSGSALVTKWLGEGEKIVQASFLIA-RCRQPSVVFISDVDLLLSSQLSE-ESPVNRIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEIDESLRRYFVKRLLVPLPDATARHQIISQLLSQHNYCLSDKEVTLLVQRTDGFSGLDVVRLCQEA 677          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 51/153 (33.33%), Postives = 78/153 (50.98%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVP-LEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG---------FEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            R VL  GPPGTGKT  AR +A ++G+P ++    E   S+  G ++  + ++FS+A      A +F+DE+D+ A  R +      R     L+ Q+DG         F   + V+ I ATNR  +LD   +   R D  +  GLPD + R +I
Sbjct:  527 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAAK--INEMFSIARR-NAPAFVFVDEIDAIA-GRHARKDPRRRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQI 675          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATAD3_RAT (ATPase family AAA domain-containing protein 3 OS=Rattus norvegicus GN=Atad3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 52/162 (32.10%), Postives = 81/162 (50.00%), Query Frame = 3
Query:   33 DIALETR-CKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY 512
            DIA+ TR  K   +  R VL  GPPGTGKT  A+ +A  +G+    +    V +    E    + KVF  A+    G ++F+DE D+F   R +E + E  R  L+  L +    +   K +++ A+N+ +  D A+  R D M+ F LP  E R+ +   Y
Sbjct:  329 DIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDV-APMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLHRTG--QHSNKFMLVLASNQPEQFDWAINDRIDEMVCFALPQREERERLVRMY 487          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATAD3_MOUSE (ATPase family AAA domain-containing protein 3 OS=Mus musculus GN=Atad3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 52/162 (32.10%), Postives = 81/162 (50.00%), Query Frame = 3
Query:   33 DIALETR-CKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY 512
            DIA+ TR  K   +  R VL  GPPGTGKT  A+ +A  +G+    +    V +    E    + KVF  A+    G ++F+DE D+F   R +E + E  R  L+  L +    +   K +++ A+N+ +  D A+  R D M+ F LP  E R+ +   Y
Sbjct:  329 DIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDV-APMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLHRTG--QHSSKFMLVLASNQPEQFDWAINDRIDEMVCFALPQREERERLVRMY 487          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGV-PLMYVPLEVVMSKYYGESERLLGKVFSLANEL-----PNGA--IIFLDEVDSFAVAR-----DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            + +L  GPPGTGKT  AR I           V    ++ KY GESE  + ++F+ A E      PN    II  DE+D+   AR     +S +H+    +++ LL +IDG EQ   ++VI  TNR+  +D AL+   R +  +   LP+ + R +I   + K
Sbjct:  259 KGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKARGSVAGNSGVHDT---VVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTK 417          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATAD3_BOVIN (ATPase family AAA domain-containing protein 3 OS=Bos taurus GN=ATAD3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 51/162 (31.48%), Postives = 82/162 (50.62%), Query Frame = 3
Query:   33 DIALETR-CKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY 512
            DIA+ TR  K   +  R VL  GPPGTGKT  A+ +A  +G+    +    V +    +    + KVF  A+    G ++F+DE D+F   R +E + E  R  L+  L +    +   K +++ A+N+ +  D A+  R D M++F LP  E R+ +   Y
Sbjct:  329 DIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDV-APMGRDGVTAMHKVFDWASTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLHRTG--QHSSKFMLVLASNQPEQFDWAINDRIDEMVSFELPQREERERLVRMY 487          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PEX1_YEAST1.084e-1331.29Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisia... [more]
MPA_MYCTU1.084e-1331.74Proteasome-associated ATPase OS=Mycobacterium tube... [more]
MPA_MYCLE1.084e-1331.74Proteasome-associated ATPase OS=Mycobacterium lepr... [more]
MPA_MYCBO1.084e-1331.74Proteasome-associated ATPase OS=Mycobacterium bovi... [more]
FIGN_DANRE9.175e-1327.32Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]
FTSHC_ARATH1.198e-1233.33Cell division protease ftsH homolog 12, chloroplas... [more]
ATAD3_RAT1.198e-1232.10ATPase family AAA domain-containing protein 3 OS=R... [more]
ATAD3_MOUSE1.198e-1232.10ATPase family AAA domain-containing protein 3 OS=M... [more]
NSF2_DROME1.565e-1233.33Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]
ATAD3_BOVIN2.669e-1231.48ATPase family AAA domain-containing protein 3 OS=B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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