CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATD3A_XENLA (ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis GN=atad3-A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 52/162 (32.10%), Postives = 80/162 (49.38%), Query Frame = 3
Query:   33 DIALETR-CKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY 512
            DIA+ TR  K      R +L  GPPGTGKT  A+ +A  +G+    +    V +    E    + KVF  A     G ++F+DE D+F   R +E + E  R  L+  L +    EQ  K +++ A+N+ +  D A+  R D ++ F LP  E R+ +   Y
Sbjct:  326 DIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTG--EQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVRLY 484          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATAD3_XENTR (ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis GN=atad3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 52/162 (32.10%), Postives = 80/162 (49.38%), Query Frame = 3
Query:   33 DIALETR-CKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY 512
            DIA+ TR  K      R +L  GPPGTGKT  A+ +A  +G+    +    V +    E    + KVF  A     G ++F+DE D+F   R +E + E  R  L+  L +    EQ  K +++ A+N+ +  D A+  R D ++ F LP  E R+ +   Y
Sbjct:  326 DIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTG--EQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVRLY 484          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NSF1_DROME (Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 53/162 (32.72%), Postives = 83/162 (51.23%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGV-PLMYVPLEVVMSKYYGESERLLGKVFSLANEL-----PNGA--IIFLDEVDSF-----AVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            + +L  GPPGTGKT  AR I           V    ++ KY GESE  + ++F+ A E      PN    II  DE+D+      +VA +S +H+    +++ LL +IDG +Q   ++VI  TNR+  +D AL+   R +  +   LP+ + R +I   + K
Sbjct:  254 KGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANVRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKQRGSVAGNSGVHDT---VVNQLLTKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTK 412          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 46/170 (27.06%), Postives = 80/170 (47.06%), Query Frame = 3
Query:   60 FESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---------------------RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            + ++ P   LF GPPGTGKT  A+ ++ +A  P +YV       +  G +   +  +F     + +  I+++DE+DS A  R+    +  +                      +L   L  +DG+++   +++I ATNR + LD A++   RFD  I F  P  E R++I
Sbjct:  373 YSNSYPMGYLFAGPPGTGKTLMAKAMSYEAETPYLYVEGSQFRCREEGVANARVDDLFKQIQNI-SPCILYIDEIDSIAERREEANKQLEQLKTIGDSIEGSNINIDQKPSDTVLMQFLIYMDGYKKRNDLIIIGATNRIETLDDAIMRPGRFDRQIVFSPPFFEERKDI 541          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 53/188 (28.19%), Postives = 84/188 (44.68%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM----HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK-----HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+  L  GPPG GKT  A+ +A +A VP + +     +    G     +  +F  A       I+++DE+D+    R + M    +    + L+ LL ++DG      V+V+A+TNR   LD AL+   R D  +   LP  + R+EI  Q+ K                      SG DI ++C +A
Sbjct:  342 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARA-PCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGADIANICNEA 528          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SEC18_CANAL (Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 53/167 (31.74%), Postives = 81/167 (48.50%), Query Frame = 3
Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQA-GVPLMYVPLEVVMSKYYGESERLLGKVFS-------LANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518
            K +    + +L  GPPGTGKT  AR ++    G     V    ++SKY G SE  +  +F        L  E  +  +I  DE+DS    R S   + T     +++ LL ++DG +Q   ++VI  TNR   +D AL+   RF+  I   LPD + R++I   + K
Sbjct:  304 KLDYKHCKGLLLYGPPGTGKTLIARKLSKMLNGKEPKIVNGPEMLSKYVGASEENIRNLFKDAEAEYKLKGEDSDLHVIIFDELDSVFKQRGSGKSDGTGVGDNVVNQLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLPDEKGRKDIFLIHTK 470          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 60/208 (28.85%), Postives = 96/208 (46.15%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGV-PLMYVPLEVVMSKYYGESERLLGKVFSLANELPN--GA-----IIFLDEVDSF-----AVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI-------AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQAERSWASKIIR 635
            R +L  GPPGTGKT  AR I           V    ++ KY GESE  + K+F+ A E     GA     II  DE+D+      ++A  S +H+    +++ LL ++DG EQ   ++VI  TNR+  +D AL+   R +  +   LPD   R +I         +Y K                 SG ++  + + A+ S  +++++
Sbjct:  331 RGILLFGPPGTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESESNVRKLFADAEEEWRRCGANSGLHIIIFDEIDAICKQRGSMAGSSSVHDT---VVNQLLSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSGAELEGLVRAAQSSAMNRLVK 535          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 53/188 (28.19%), Postives = 84/188 (44.68%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM----HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK-----HXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+  L  GPPG GKT  A+ +A +A VP + +     +    G     +  +F  A       I+++DE+D+    R + M    +    + L+ LL ++DG      V+V+A+TNR   LD AL+   R D  +   LP  + R+EI  Q+ K                      SG DI ++C +A
Sbjct:  342 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARA-PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEA 528          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PCH2_CAEEL (Putative pachytene checkpoint protein 2 OS=Caenorhabditis elegans GN=pch-2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 47/153 (30.72%), Postives = 76/153 (49.67%), Query Frame = 3
Query:   69 NRPRAVLFEGPPGTGKTSCARVIANQAGVPL-----MYVPLEV----VMSKYYGESERLLGKVFSLANELPNG----AIIFLDEVDSFAVARDSEMHEA----TRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLP 476
            N  R +L  GPPGTGKTS  + +A    + +       V LE+    + SK++ ES +L+ K+F   +EL         + +DEV+S  + R+S    +      R ++ LL QID   +   V+++  +N +  LD AL+ R D +   G P
Sbjct:  170 NVNRLILLTGPPGTGKTSLCKGLAQHLSIRMNDKYSKSVMLEINSHSLFSKWFSESGKLVQKMFDQIDELAEDEKCMVFVLIDEVESLGMCRESSSSRSEPSDAIRAVNALLTQIDRIRRRDNVLILCTSNLESTLDKALVDRADIVKNVGQP 322          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 56/157 (35.67%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQ--AGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPN--GA-----IIFLDEVDSFAVARDSE-----MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            + +L  GPPG GKT  AR I     A  P +    E+ ++KY GESE  + K+F+ A E     GA     II  DE+D+    R S      +H+    +++ LL +IDG EQ   ++VI  TNR   +D AL+   R +  +  GLPD + R +I
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEI-LNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDT---VVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQI 406          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
ATD3A_XENLA3.486e-1232.10ATPase family AAA domain-containing protein 3-A OS... [more]
ATAD3_XENTR3.486e-1232.10ATPase family AAA domain-containing protein 3 OS=X... [more]
NSF1_DROME4.553e-1232.72Vesicle-fusing ATPase 1 OS=Drosophila melanogaster... [more]
YCF2_MESVI5.947e-1227.06Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=... [more]
SPG7_MOUSE1.014e-1128.19Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
SEC18_CANAL1.014e-1131.74Vesicular-fusion protein SEC18 OS=Candida albicans... [more]
NSF_CAEEL1.014e-1128.85Vesicle-fusing ATPase OS=Caenorhabditis elegans GN... [more]
SPG7_HUMAN1.325e-1128.19Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
PCH2_CAEEL1.325e-1130.72Putative pachytene checkpoint protein 2 OS=Caenorh... [more]
NSF_RAT1.730e-1135.67Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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