CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NSF_PONAB (Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 56/157 (35.67%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQ--AGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPN--GA-----IIFLDEVDSFAVARDSE-----MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            + +L  GPPG GKT  AR I     A  P +    E+ ++KY GESE  + K+F+ A E     GA     II  DE+D+    R S      +H+    +++ LL +IDG EQ   ++VI  TNR   +D AL+   R +  +  GLPD + R +I
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEI-LNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDT---VVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQI 406          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 56/157 (35.67%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQ--AGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPN--GA-----IIFLDEVDSFAVARDSE-----MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            + +L  GPPG GKT  AR I     A  P +    E+ ++KY GESE  + K+F+ A E     GA     II  DE+D+    R S      +H+    +++ LL +IDG EQ   ++VI  TNR   +D AL+   R +  +  GLPD + R +I
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEI-LNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDT---VVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQI 406          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 56/157 (35.67%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQ--AGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPN--GA-----IIFLDEVDSFAVARDSE-----MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            + +L  GPPG GKT  AR I     A  P +    E+ ++KY GESE  + K+F+ A E     GA     II  DE+D+    R S      +H+    +++ LL +IDG EQ   ++VI  TNR   +D AL+   R +  +  GLPD + R +I
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEI-LNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDT---VVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQI 406          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 53/161 (32.92%), Postives = 78/161 (48.45%), Query Frame = 3
Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQA-GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGA--------IIFLDEVDSFAVARDSEMHEAT--RRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            K   N  + +L  GPPGTGKT  AR I     G     V    +++KY G+SE  +  +F  A E+   A        II  DE+D+   +R S   ++     +++ LL  IDG E    ++VI  TNRK  +D AL+   R +  +   LPD   R++I
Sbjct:  251 KLGVNHVKGMLLYGPPGTGKTLIARQIGKMLNGREPKVVSGPSILNKYVGQSEENIRMLFRDA-EIEQKAKGDDSGLHIIIFDELDAICKSRGSRQGDSGVGDSVVNQLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQI 410          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 56/157 (35.67%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQ--AGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPN--GA-----IIFLDEVDSFAVARDSE-----MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            + +L  GPPG GKT  AR I     A  P +    E+ ++KY GESE  + K+F+ A E     GA     II  DE+D+    R S      +H+    +++ LL +IDG EQ   ++VI  TNR   +D AL+   R +  +  GLPD + R +I
Sbjct:  254 KGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEI-LNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDT---VVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQI 406          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATD3B_XENLA (ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis GN=atad3-B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 51/162 (31.48%), Postives = 79/162 (48.77%), Query Frame = 3
Query:   33 DIALETR-CKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY 512
            DIA+ TR  K      R +L  GPPGTGKT  A+ +A  + +    +    V +    E    + KVF  A     G ++F+DE D+F   R +E + E  R  L+  L +    EQ  K +++ A+N+ +  D A+  R D ++ F LP  E R+ +   Y
Sbjct:  326 DIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHSSMDYAIMTGGDV-APMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTG--EQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVRLY 484          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATD3A_HUMAN (ATPase family AAA domain-containing protein 3A OS=Homo sapiens GN=ATAD3A PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 51/163 (31.29%), Postives = 82/163 (50.31%), Query Frame = 3
Query:   33 DIALETRCKFESNRP--RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY 512
            DIA+ TR   + NR   R +L  GPPGTGKT  A+ +A  +G+    +    V +    E    + K+F  AN    G ++F+DE D+F   R +E + E  R  L+  L +    +   K +++ A+N+ +  D A+  R + M+ F LP  E R+ +   Y
Sbjct:  378 DIAIATR-NTKKNRSLYRNILMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDV-APMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLYRTG--QHSNKFMLVLASNQPEQFDWAINDRINEMVHFDLPGQEERERLVRMY 536          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: Y529_ATV (Uncharacterized protein ORF529 OS=Acidianus two-tailed virus PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 52/156 (33.33%), Postives = 78/156 (50.00%), Query Frame = 3
Query:   84 VLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNG--AIIFLDEVDSFAVAR------DSEMHEATRRILSVLLR--QIDGFEQDKKVVVIAATN-RKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAK 518
            +L  G PG GK+  A++I+   G+ ++    + +MSKY GESE+ + ++F    E+P     I+F+DEVD   V R               +IL+V L+  Q +  E+   V+ IA TN R +DLD A   RF   I F  P  E  +    +Y K
Sbjct:  112 ILLYGAPGMGKSELAKLISKWLGIGMIQKRADDIMSKYLGESEQNMARLFK--EEIPQNLPTIVFMDEVDWLGVRRRFGSTTADTASTTVGQILTVFLQLFQDEVIEKRLPVLFIATTNARLEDLDDAFKRRFPFKIYFTPPSQEMIEYFTDKYIK 265          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATD3B_HUMAN (ATPase family AAA domain-containing protein 3B OS=Homo sapiens GN=ATAD3B PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 51/159 (32.08%), Postives = 80/159 (50.31%), Query Frame = 3
Query:   33 DIALETRCKFESNRP--RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500
            DIA+ TR   + NR   R +L  GPPGTGKT  A+ +A  +G+    +    V +    E    + K+F  AN    G ++F+DE D+F   R   E+ +  R  L+  L  +   +   K +++ A+N  +  D A+ SR D M+ F LP  E R+ +
Sbjct:  330 DIAIATR-NTKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDV-APMGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRATEEISKDLRATLNAFLYHMG--QHSNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERERL 484          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 53/161 (32.92%), Postives = 80/161 (49.69%), Query Frame = 3
Query:   57 KFESNRPRAVLFEGPPGTGKTSCARVIANQ--AGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN-------ELPNGAIIFLDEVDSFAVARDSEMHEAT--RRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            K   N  + +L  GPPGTGKT  AR I     A  P +    E+ ++KY G+SE  + K+F+ A        E     II  DE+D+    R S   +     ++++ LL ++DG +Q   ++VI  TNRK  +D AL+   R +  +   LPD   R +I
Sbjct:  298 KLGINHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI-LNKYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKRGSSGGDTGVGDQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQI 457          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
NSF_PONAB1.730e-1135.67Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 ... [more]
NSF_MOUSE1.730e-1135.67Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]
NSF_HUMAN1.730e-1135.67Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_DICDI1.730e-1132.92Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]
NSF_CRIGR1.730e-1135.67Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]
ATD3B_XENLA1.730e-1131.48ATPase family AAA domain-containing protein 3-B OS... [more]
ATD3A_HUMAN1.730e-1131.29ATPase family AAA domain-containing protein 3A OS=... [more]
Y529_ATV2.951e-1133.33Uncharacterized protein ORF529 OS=Acidianus two-ta... [more]
ATD3B_HUMAN3.855e-1132.08ATPase family AAA domain-containing protein 3B OS=... [more]
SEC18_SCHPO5.034e-1132.92Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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