CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22 Identity = 71/185 (38.38%), Postives = 92/185 (49.73%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PR VL GPPG GKT A+ +A+ + V + KY GE R++ VF LA E AIIF+DE+D+ A R A R RIL LL Q+DGF+Q+ V VI ATNR LDPAL+ R D I F LPD ++ I + +SG DI +CQ++ Sbjct: 199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE-NAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQES 382
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22 Identity = 71/185 (38.38%), Postives = 92/185 (49.73%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PR VL GPPG GKT A+ +A+ + V + KY GE R++ VF LA E AIIF+DE+D+ A R A R RIL LL Q+DGF+Q+ V VI ATNR LDPAL+ R D I F LPD ++ I + +SG DI +CQ++ Sbjct: 199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE-NAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQES 382
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22 Identity = 71/185 (38.38%), Postives = 92/185 (49.73%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PR VL GPPG GKT A+ +A+ + V + KY GE R++ VF LA E AIIF+DE+D+ A R A R RIL LL Q+DGF+Q+ V VI ATNR LDPAL+ R D I F LPD ++ I + +SG DI +CQ++ Sbjct: 199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE-NAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQES 382
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22 Identity = 71/185 (38.38%), Postives = 92/185 (49.73%), Query Frame = 3 Query: 75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PR VL GPPG GKT A+ +A+ + V + KY GE R++ VF LA E AIIF+DE+D+ A R A R RIL LL Q+DGF+Q+ V VI ATNR LDPAL+ R D I F LPD ++ I + +SG DI +CQ++ Sbjct: 199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE-NAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQES 382
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATAD2_PONAB (ATPase family AAA domain-containing protein 2 OS=Pongo abelii GN=ATAD2 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22 Identity = 69/168 (41.07%), Postives = 90/168 (53.57%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEV-----VMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500 PEV++ KF+ PR LF GPPGTGKT AR +AN+ V + +SK+ GESER L +F A ++ +IIF DE+D A R S + I+S LL +DG + ++VVI ATNR +DPAL RFD F LPD E R+EI Sbjct: 280 PEVFE--------KFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQM-RPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDSRGEIVVIGATNRLDAIDPALRRPGRFDREFLFSLPDKEARKEI 438
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: ATAD2_MOUSE (ATPase family AAA domain-containing protein 2 OS=Mus musculus GN=Atad2 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22 Identity = 69/168 (41.07%), Postives = 88/168 (52.38%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAG-----VPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500 PEV++ KF+ PR LF GPPGTGKT AR +AN+ V +SK+ GESER L +F A ++ AIIF DE+D A R S + I+S LL +DG + ++VVI ATNR +DPAL RFD F LPD R+EI Sbjct: 104 PEVFE--------KFKIQPPRGCLFYGPPGTGKTLVARALANECSRGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQM-RPAIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDSRGEIVVIGATNRLDSIDPALRRPGRFDREFLFSLPDKNARKEI 262
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: YB7A_SCHPO (Uncharacterized AAA domain-containing protein C16E9.10c OS=Schizosaccharomyces pombe GN=SPBC16E9.10c PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22 Identity = 60/169 (35.50%), Postives = 89/169 (52.66%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 PE+Y + + P VL GPPG GKT A+ +AN++ + + +++KY GESER + +VF L + +IF DE+D+ RD + EA+ R+++ LL ++DG V VIAATNR +DPA++ R D + LPD R EI K Sbjct: 515 PELYQSVGISA--------PTGVLLWGPPGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVF-LRARASSPCVIFFDELDAMVPRRDDSLSEASSRVVNTLLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTK 674 HSP 2 Score: 97.0561 bits (240), Expect = 1.012e-19 Identity = 65/173 (37.57%), Postives = 90/173 (52.02%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQID--GFEQ--DKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAK 518 PEVY + PR VL GPPG GKT A +AN+ GVP + + ++S GESE+ + +VF A L ++F+DE+D+ R+S E RRI++ L +D FE+ K V+VI ATNR LD AL RFD I +P + R++I AK Sbjct: 197 PEVYQYTGIHP--------PRGVLLHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLA-PCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22 Identity = 69/205 (33.66%), Postives = 103/205 (50.24%), Query Frame = 3 Query: 15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 +PE++ +I +E P+ VL GPPGTGKT A+ +A ++ ++V K+ GE R++ ++F +A +IIF+DE+D+ R + +R L LL ++DGF+ V +IAATNR LDPAL+ RFD +I LPD + R EI Y K SG DI++VC +A Sbjct: 156 NPEIFREIGVEP--------PKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKR-KAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEA 351
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21 Identity = 69/205 (33.66%), Postives = 103/205 (50.24%), Query Frame = 3 Query: 15 SPEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQY---AKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 +PE++ +I ++ P+ VL GPPGTGKT A+ +A ++ + V K+ GE R++ +VF LA +I+F+DE+D+ R + +R L LL +IDGF+ V +IAATNR LDPAL+ RFD +I LP+ E R+EI Y K SG +I++VC +A Sbjct: 156 NPELFKEIGIDP--------PKGVLLYGPPGTGKTLLAKAVATESNATFIQVVASEFAQKFVGEGARIVREVFELARR-KAPSIVFIDEIDAIGAKRVDMGTSGEREIQRTLMQLLAEIDGFKPLDNVKIIAATNRLDILDPALLRPGRFDRLIEVPLPNFEGRKEIFRIYLQKMKTDGNIRYDILASMTEGFSGAEIKNVCTEA 351
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21 Identity = 65/166 (39.16%), Postives = 90/166 (54.22%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500 PE+++ + +E P+ VL GPPG GKT A+ +AN + V ++ K+ GE RL+ ++F LA E IIF+DE+D+ R E R R L LL ++DGF+ V VIAATNR LDPAL+ RFD +I LPD++ R EI Sbjct: 161 PELFEQVGIEP--------PKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKE-KAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEI 317 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |