CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 66/166 (39.76%), Postives = 91/166 (54.82%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            PE+++++ ++         P+ VL  GPPG GKT  A+ IA++     + V    ++ KY GE  RL+ ++F LA E     IIF+DE+D+    R  E     R   R L  LL ++DGF+    V VIAATNR   LDPAL+   RFD +I   LPD E R EI
Sbjct:  160 PELFEEVGIDP--------PKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKE-KAPTIIFIDEIDAIGAKRLDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEI 316          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 72/204 (35.29%), Postives = 102/204 (50.00%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQE---IAAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            PE++ ++ +E         P+ VL  GPPGTGKT  A+ +ANQ     + V     + KY GE  RL+ +VF LA E    +IIF+DE+D+ A  R   D+      +R +  LL ++DGF+    V VI ATNR   LDPA++   RFD +I   LP  E R +   I  +  K                 SG DI+ +C +A
Sbjct:  164 PELFAEVGIEP--------PKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKE-KAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEA 358          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 71/183 (38.80%), Postives = 90/183 (49.18%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQ 599
            PR VL  GPPG GKT  A+ +A+      + V     + KY GE  R++  VF LA E    AIIF+DE+D+ A  R      A R   RIL  LL Q+DGF+Q+  V VI ATNR   LDPAL+   R D  I F LPD   ++ I +                       +SG DI  +CQ
Sbjct:  199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE-NAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQ 380          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAT5_MOUSE (Spermatogenesis-associated protein 5 OS=Mus musculus GN=Spata5 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 64/198 (32.32%), Postives = 106/198 (53.54%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---EQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXMS----GRDIRDVCQQAERSWASKIIRGQ 641
            PR +L  GPPGTGKT  AR +AN+ G  +  +    ++SK+YGE+E  L ++F+ A  L + +IIF+DE+D+    R+    E  +R+++ LL  +DG      + +V+V+ ATNR Q LD AL    RFD  I  G+P+ ++R +I  +  +                 +    G D++ +C +A      +++R Q
Sbjct:  387 PRGLLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEAT-LRHPSIIFIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRRVLRKQ 583          

HSP 2 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE--MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            P+ VL  GPPG  KT  A+ +AN++G+  + +    +M+KY GESER + ++F  A  +   +IIF DE+D+ AV R S         R+L+ LL ++DG EQ K V V+AATNR   +D AL+   R D +I   LPD   R+EI
Sbjct:  661 PKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVA-PSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREI 805          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491
            R +L  GPPG GKT  A+ +A ++      +    + SKY GE E+L+  +FS+A EL   +IIF+DEVDS    R    H+A+RR+ +  L + DG +   D +V+V+ ATNR Q+LD A++ RF   +   LP+ E R
Sbjct:  363 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVAREL-QPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVSLPNEETR 501          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491
            R +L  GPPG GKT  A+ +A ++      +    + SKY GE E+L+  +FS+A EL   +IIF+DEVDS    R    H+A+RR+ +  L + DG +   D +V+V+ ATNR Q+LD A++ RF   +   LP+ E R
Sbjct:  360 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVAREL-QPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVALPNEETR 498          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 65/166 (39.16%), Postives = 91/166 (54.82%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            PE+++++ ++         P+ VL  GPPG GKT  A+ +A++     + V    ++ KY GE  RL+ ++F LA E     IIF+DE+D+    R  E     R   R L  LL ++DGF+    V VIAATNR   LDPAL+   RFD +I   LPD E R EI
Sbjct:  163 PELFEEVGIDP--------PKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKE-KAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEI 319          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 65/166 (39.16%), Postives = 91/166 (54.82%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            PE+++++ ++         P+ VL  GPPG GKT  A+ +A++     + V    ++ KY GE  RL+ ++F LA E     IIF+DE+D+    R  E     R   R L  LL ++DGF+    V VIAATNR   LDPAL+   RFD +I   LPD E R EI
Sbjct:  163 PELFEEVGIDP--------PKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKE-KAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEI 319          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TBP7_CAEEL (TAT-binding homolog 7 OS=Caenorhabditis elegans GN=lex-1 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 69/168 (41.07%), Postives = 91/168 (54.17%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEV-----VMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500
            PEV++        KF  N P+ V+F GPPGTGKT  AR +AN+       V   +      +SK+ GESER L  +F  A  +   +IIF DE+D  A  R S+  +    I+S LL  +DG +   +VVVI ATNR   LDPAL    RFD  + F LPD   R++I
Sbjct:  414 PEVFE--------KFRINPPKGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAYAM-RPSIIFFDEIDGLAPVRSSKQDQIHASIVSTLLALMDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQI 572          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: TBP7_CAEBR (TAT-binding homolog 7 OS=Caenorhabditis briggsae GN=lex-1 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 67/159 (42.14%), Postives = 87/159 (54.72%), Query Frame = 3
Query:   45 ETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEV-----VMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500
            E   KF+ N P+ V+F GPPGTGKT  AR +AN+       V   +      +SK+ GESER L  +F  A  +   +IIF DE+D  A  R S+  +    I+S LL  +DG +   +VVVI ATNR   LDPAL    RFD  + F LPD   R+ I
Sbjct:  429 EVFAKFKINPPKGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAYAM-RPSIIFFDEIDGLAPVRSSKQDQIHASIVSTLLALMDGLDGRGEVVVIGATNRLDSLDPALRRPGRFDRELRFSLPDLNARRHI 586          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PSMR_PYRFU1.081e-2139.76Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_ARCFU1.081e-2135.29Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PRS6B_MOUSE1.081e-2138.8026S protease regulatory subunit 6B OS=Mus musculus... [more]
SPAT5_MOUSE1.412e-2132.32Spermatogenesis-associated protein 5 OS=Mus muscul... [more]
SPAST_XENTR1.412e-2140.00Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
SPAST_XENLA1.412e-2140.00Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
PSMR_PYRHO1.412e-2139.16Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_PYRAB1.412e-2139.16Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
TBP7_CAEEL1.844e-2141.07TAT-binding homolog 7 OS=Caenorhabditis elegans GN... [more]
TBP7_CAEBR1.844e-2142.14TAT-binding homolog 7 OS=Caenorhabditis briggsae G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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