CN188561
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21 Identity = 55/143 (38.46%), Postives = 85/143 (59.44%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI 500 R +L GPPG GKT A+ +A ++ + + SKY GE E+L+ +F++A EL +IIF+DE+DS R H+A+RR+ + L + DG + D++V+V+ ATNR Q+LD A++ RF I LP E R ++ Sbjct: 329 RGLLLFGPPGNGKTMLAKAVAMESNATFFNISAATLTSKYVGEGEKLVRALFAVAREL-QPSIIFIDEIDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLRRFAKRIYVALPTEETRLKL 470
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21 Identity = 63/172 (36.63%), Postives = 95/172 (55.23%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 518 PE++ + +E P+ VL GPPGTGKT A+ +AN+ + + ++ KY GE R++ ++F LA E + +IIF+DE+DS R + R R L LL ++DGF+ V ++AATNR LDPAL+ RFD MI +P E R++I +A+ Sbjct: 182 PELFQKVGIEP--------PKGVLLYGPPGTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKE-KSPSIIFIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHAR 344
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21 Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3 Query: 18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605 PE Y+++ ++ P+ V+ GPPGTGKT A+ +ANQ + V ++ KY G+ +L+ ++F +A E +I+F+DE+D+ R +S +R + LL Q+DGF+ V VI ATNR + LDPALI R D I F LPD + ++ I + +SG DI+ +C +A Sbjct: 208 PEYYEEMGIKP--------PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE-HGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEA 402
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21 Identity = 74/240 (30.83%), Postives = 118/240 (49.17%), Query Frame = 3 Query: 21 EVYDDIALETRCKFESNR-----PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQD-KKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEI---AAQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA--ERSWASKIIRGQITKDGEQACLPPLQEYIESATN 707 E+ D I L R +S PR +L GPPG GKT A+ +A AG + + + + K+YGES++L VFS+A + IIF+DE+DSF R S HE+T + + + DGF +++V+ ATNR +D+D A++ R + +P+ + R +I + K +SG D+++VC+ A R+ A+ G + + LP Q ESA + Sbjct: 94 ELKDRIILPLRFASQSGSHLLSPPRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKF-QPTIIFIDEIDSFLRDRQSHDHESTAMMKAQFMTLWDGFSSSGDQIIVMGATNRPRDVDAAILRRMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVCRLALLARAKATVASGGSVNQ-----LLPLEQSDFESAVH 327
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21 Identity = 70/198 (35.35%), Postives = 100/198 (50.51%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDS-EMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQAERSWASKIIRG 638 + VL GPPGTGKT A+ +A + G V + SKY+GESE+L+ +F +A + IF+DE+DS R + HEA+RR+ S LL Q+DG E K V+V+AATN D+D AL R + I LP+ + R+++ K M SG DI +VC+ A + I+G Sbjct: 268 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMA-RFYAPSTIFIDEIDSICSKRGTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDASMMAMRRRIQG 464
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_DROYA (Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21 Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQ 494 + +L GPPG GKT AR +A + + + + SKY G+ E+L+ +F++A + +IIF+DEVDS R S HEA+RR+ + L + DG ++VV+AATNR Q+LD A + RF + LPD + R+ Sbjct: 517 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM-QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRE 657
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21 Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQ 494 + +L GPPG GKT AR +A + + + + SKY G+ E+L+ +F++A + +IIF+DEVDS R S HEA+RR+ + L + DG ++VV+AATNR Q+LD A + RF + LPD + R+ Sbjct: 536 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM-QPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRE 676
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_DROSI (Spastin OS=Drosophila simulans GN=spas PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21 Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQ 494 + +L GPPG GKT AR +A + + + + SKY G+ E+L+ +F++A + +IIF+DEVDS R S HEA+RR+ + L + DG ++VV+AATNR Q+LD A + RF + LPD + R+ Sbjct: 517 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM-QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRE 657
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21 Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQ 494 + +L GPPG GKT AR +A + + + + SKY G+ E+L+ +F++A + +IIF+DEVDS R S HEA+RR+ + L + DG ++VV+AATNR Q+LD A + RF + LPD + R+ Sbjct: 517 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM-QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRE 657
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21 Identity = 55/142 (38.73%), Postives = 82/142 (57.75%), Query Frame = 3 Query: 78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQ 494 + +L GPPG GKT AR +A + + + + SKY G+ E+L+ +F++A L +IIF+DEVDS R S HEA+RR+ + L + DG ++VV+AATNR Q+LD A + RF + LPD + R+ Sbjct: 547 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHL-QPSIIFIDEVDSLLSERSSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRE 687 The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 381
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bpback to top |