CX300696
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Saccharomyces cerevisiae GN=RPB10 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 7.510e-19 Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLV-NEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQHR 251 MI+PVRCF+CGKV+G+K++ YL+LL +E AL+ LGL RYCCRRMILTHVDLI+K L YN ++ R Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNPLEKR 69
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_ASHGO (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Ashbya gossypii GN=RPB10 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.673e-18 Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNE-YSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQHR 251 MI+PVRCF+CGKV+G+K++ YL++L E AL+ LGL RYCCRRMILTHVDLI+K L YN ++ R Sbjct: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNPLEKR 69
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_ENCCU (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Encephalitozoon cuniculi GN=RPB10 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.122e-14 Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQHRT 254 MIIP+RCFTCGK I +K++ Y +LL + +AL+ELG+ R CCRRM L HVD++ KLL ++ ++ T Sbjct: 1 MIIPIRCFTCGKEISSKWEPYQELLKIDKGKAEALDELGMRRICCRRMFLGHVDIVDKLLKFDIVKDFT 69
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULTO (DNA-directed RNA polymerase subunit N OS=Sulfolobus tokodaii GN=rpoN PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14 Identity = 30/62 (48.39%), Postives = 49/62 (79.03%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 MIIP+RCFTCG +IG+K++ ++ + N L++LG+ RYCCRRM+L+HVD+I+++++Y Sbjct: 1 MIIPIRCFTCGSLIGDKWEPFITRVSNGEDPGKVLDDLGVKRYCCRRMLLSHVDIIKEVIHY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_PYRHO (DNA-directed RNA polymerase subunit N OS=Pyrococcus horikoshii GN=rpoN PE=3 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14 Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 MIIPVRCFTCGKVIG+KY + + + L++LGL RYCCRRM+L+HV+LI +++Y Sbjct: 1 MIIPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIMHY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_PYRFU (DNA-directed RNA polymerase subunit N OS=Pyrococcus furiosus GN=rpoN PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.241e-13 Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 MI+PVRCFTCGKVIG+KY + + + L++LGL RYCCRRM+L+HV+LI +++Y Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIMHY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_PYRAB (DNA-directed RNA polymerase subunit N OS=Pyrococcus abyssi GN=rpoN PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.241e-13 Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 MI+PVRCFTCGKVIG+KY + + + L++LGL RYCCRRM+L+HV+LI +++Y Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIMHY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METKA (DNA-directed RNA polymerase subunit N OS=Methanopyrus kandleri GN=rpoN PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.764e-13 Identity = 33/63 (52.38%), Postives = 48/63 (76.19%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNE-YSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 MIIP+RCFTCG+ I + ++ Y++L+ E +AL+ELG+ RYCCRRM L+HVDL+++ L Y Sbjct: 1 MIIPIRCFTCGRPIAHLWEKYVELIEEEGMEPGEALDELGVDRYCCRRMFLSHVDLLEESLPY 63
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULAC (DNA-directed RNA polymerase subunit N OS=Sulfolobus acidocaldarius GN=rpoN PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.158e-13 Identity = 28/62 (45.16%), Postives = 48/62 (77.42%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 MIIP+RCFTCG V+ +K++ + + ++ + L ELG+ RYCCRRM+L+HV++I+++++Y Sbjct: 1 MIIPIRCFTCGAVVADKWEPFSNRVMGGEDPEKVLTELGVNRYCCRRMLLSHVNIIREIIHY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METMA (DNA-directed RNA polymerase subunit N OS=Methanosarcina mazei GN=rpoN PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12 Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 3 Query: 51 IIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 +IPVRCF+CGKVI N +D Y + + A L++LG+TRYCCRRM L+HV+LI L Y Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEDAAAVLDDLGITRYCCRRMFLSHVELIDVLSPY 61 The following BLAST results are available for this feature:
BLAST of CX300696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300696 ID=CX300696; Name=CX300696; organism=Citrus sinensis; type=EST; length=412bpback to top |