CX300696
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_SULIA (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain M.16.27) GN=rpoN PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 M+IP+RCFTCG +I +K+ ++ + + L++LG+ RYCCRRM+L+H+D+I ++++Y Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METB6 (DNA-directed RNA polymerase subunit N OS=Methanoregula boonei (strain 6A8) GN=rpoN PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.587e-11 Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 3 Query: 51 IIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 +IPVRCFTCGKVI ++ Y K L++LG+TRYCCRRM+LTH ++I +L Y Sbjct: 1 MIPVRCFTCGKVISPAWEEYKARREKGEDPKKILDDLGITRYCCRRMLLTHKEIIDELNPY 61
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_THEAC (DNA-directed RNA polymerase subunit N OS=Thermoplasma acidophilum GN=rpoN PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11 Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDA----------LNELGLTRYCCRRMILTHVDLIQKLLNYN 236 MIIPVRCF+CG+VI + Y Y+ VNE A+ ++LG+ RYCCRRMI++HVDLI +++ ++ Sbjct: 1 MIIPVRCFSCGRVIASDYGRYIKR-VNEIKAEGRDPSPEEIEKIFDDLGIERYCCRRMIVSHVDLISEIMPFS 72
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_PYRKO (DNA-directed RNA polymerase subunit N OS=Pyrococcus kodakaraensis GN=rpoN PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11 Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 MI+PVRCFTCGKV+ +KY + + L++LG+ RYCCRR +L+HV+LI +++ Y Sbjct: 1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METTP (DNA-directed RNA polymerase subunit N OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpoN PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11 Identity = 28/61 (45.90%), Postives = 46/61 (75.41%), Query Frame = 3 Query: 51 IIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 +IPVRCF+CGKVI + ++ Y + + +E K +++LG+ RYCCRRM+L+HV++++ L Y Sbjct: 1 MIPVRCFSCGKVISSVWEEYRERIKSEPPGK-VMDDLGIERYCCRRMLLSHVEVVEMLRRY 60
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METVS (DNA-directed RNA polymerase subunit N OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpoN PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11 Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTH 203 MI P+RCF+CG VI YD Y L N S ++ LN+LG+T+YCCRRM +H Sbjct: 1 MIFPIRCFSCGNVISEVYDEYKTRLSNVESPEEILNDLGVTKYCCRRMFASH 52
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METS5 (DNA-directed RNA polymerase subunit N OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpoN PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11 Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 MIIPVRCFTCG +I +K+D + + L++L + R CCRR +LTHVD+I++++NY Sbjct: 1 MIIPVRCFTCGSLIADKWDAFSTRVRAGEDPGKVLDDLNVKRLCCRRSLLTHVDIIREVVNY 62
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPON_METHJ (DNA-directed RNA polymerase subunit N OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpoN PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11 Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 3 Query: 51 IIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNY 233 +IPVRCFTCGKVI Y+ + K L++LG+ RYCCRRM+LTH ++I +L Y Sbjct: 1 MIPVRCFTCGKVISTAYEEFKRRRDASEDPKRILDDLGMDRYCCRRMLLTHKEIIDELNPY 61 The following BLAST results are available for this feature:
BLAST of CX300696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300696 ID=CX300696; Name=CX300696; organism=Citrus sinensis; type=EST; length=412bpback to top |