CN188552

Overview
NameCN188552
Unique NameCN188552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: AT1A_TAESO (Sodium/potassium-transporting ATPase subunit alpha OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 36/124 (29.03%), Postives = 75/124 (60.48%), Query Frame = -2
Query:  498 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTIL 869
            +V+K+++D++++DDNF S+VT +  GR +++N++K + + LT N+  +    +  ++   +PL  + +L ++L  D + A++LA E+   D+M + P    +P   KL+   LI  A  Q+ ++
Sbjct:  731 DVSKQAADMILLDDNFASIVTGVEEGRIIFDNLKKSIAYTLTSNIPEITPFLIFILADVPLPLGTITILCIDLGTDMVPAISLAYEE-AEDIMKRMP---RDPFRDKLVNERLISMAYGQIGMI 850          
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: AT1A_HYDAT (Sodium/potassium-transporting ATPase subunit alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 36/124 (29.03%), Postives = 75/124 (60.48%), Query Frame = -2
Query:  498 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTIL 869
            +V+K+++D++++DDNF S+VT +  GR +++N++K + + LT N+  +    +  +    +PL  + +L ++L  D + A++LA E+  +D+M + P     P+  KL+   LI  A  Q+ ++
Sbjct:  748 DVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIVYTLTSNIPEISPFLMFILFGIPLPLGTITILCIDLGTDMVPAISLAYEKAESDIMKRHP---RNPIRDKLVNERLISLAYGQIGMM 868          
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: AT1A4_HUMAN (Sodium/potassium-transporting ATPase subunit alpha-4 OS=Homo sapiens GN=ATP1A4 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 36/127 (28.35%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  489 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTL 869
            +V+K+++D++++DDNF S+VT +  GR +++N++K + + LT N+  +    +  +    +PL  + +L ++L  D + A++LA E   +D+M + P     P    L+   LI  A  Q+ ++  L
Sbjct:  746 DVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIMYTLTSNIPEITPFLMFIILGIPLPLGTITILCIDLGTDMVPAISLAYESAESDIMKRLP---RNPKTDNLVNHRLIGMAYGQIGMIQAL 869          
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: ATC3_SCHPO (Calcium-transporting ATPase 3 OS=Schizosaccharomyces pombe GN=cta3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 34/102 (33.33%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  579 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKV-----PLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPP 869
            +VAK++SDIV+ DDNF+S+V  +  GR +++NI +F+   L  NV  +++  V      +V     P++ V++LW N+I  +  ++ L  E    D+M + P
Sbjct:  726 DVAKDASDIVLTDDNFSSIVNAIEEGRRMFDNIMRFVLHLLVSNVGEVILLVVGLAFRDEVHLSVFPMSPVEILWCNMITSSFPSMGLGMELAQPDVMERLP 827          
The following BLAST results are available for this feature:
BLAST of CN188552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
AT1A_TAESO3.164e-1129.03Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A_HYDAT4.133e-1129.03Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A4_HUMAN4.133e-1128.35Sodium/potassium-transporting ATPase subunit alpha... [more]
ATC3_SCHPO9.206e-1133.33Calcium-transporting ATPase 3 OS=Schizosaccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188552 ID=CN188552; Name=CN188552; organism=Citrus sinensis; type=EST; length=870bp
TATCAAATAATTTCATTATGAACTAATTAGCTATTAGACTTATATCTATA
GATCGAGCTAAGAAACTTATGAAACTAAACAAAGATCATAGAAAATATTA
ACAGATAGAGAATTGATTATGGATTTGTGATTCATGAAGCTCTTTGCTTG
AAAAGCAGCTGCGTGCCAGAAACGGGAATGCACTTGAAGAGAAAACCAAT
TGGCCAAGACATAGCTGCAATGCCAATACAAGCTGCCCATTGCCCCCAGT
TCAGCCTCTCAGTATCAGCAAACTTCTTCAGAAACTCTACCATTATGAGT
TGAAGAACAATGGTAATTCCAATGATTGCTAGAAACAACTTGTTCTTGTG
TATCCCTTTGAATATATTCTTCTTCTCAAGTTTCCTAGCATTGAACTCAT
TGAAGATTTGGCAGAAGACAAAAGTATTGAAAATCATGGTATCTTTAACA
CTTTCATTCACGCTGAAGATTGATCTTCCTTTAAATTGCAGAGTCAGTAA
GATGGTCACCTGATAAATGGCCTGAGGGATGAGATTCCTCCACATGAGTT
TTGTTATCAGAGGCTCGGATCGGCCAACGGGAGGCTTTGACATGAGATCA
TTGGTGGGCTGCTCAGTGGCCAATGCCAATGCTCCTAGTGTATCCATTAT
CAGGTTCACCCAGAGCAGCTGAACAGCAGTTAGTGGGACTTTTCCTGAAG
AAACAGCAGCAACAAAGTTGATGACAAGAGCAGCAACATTGACTGTGAGC
TGAAATTGAAGGAATTTCTGAATGTTGTTGTAGACACATCGTCCCCATCT
CAGAACTGTCACTACAGAGGTGAAGTTATCATCCATAATGACGATATCTG
AGCTCTCCTTTGCCACTTCA
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