CN188552

Overview
NameCN188552
Unique NameCN188552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: ATN2_YEAST (Sodium transport ATPase 2 OS=Saccharomyces cerevisiae GN=ENA2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 76/285 (26.67%), Postives = 121/285 (42.46%), Query Frame = -2
Query:  138 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAA---LVINFVAAVSSGK--VPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQV--TILLTLQFKGRSIFSV-------------NESVKD-----TMIFNTFVFCQIFNEFNARKLEK-------------KNIFKGIHKNK-LFLAII-GITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGTQLLFK-QRA 869
            +V+KE+SDIV+ DDNF S++  +  GR + +NIQKF+   L  NVA    L+I  V    +GK   PL+ V++LW+ ++     A+ L  E+   DLM +PP      + T   W  +I    Y +  T      F G S++ +             N S +D     +  F T  +C +   +    + +             K  F+ I  N+ LF +II G      ++ +  +       +    +W   I      W    L+KC    G +  FK QRA
Sbjct:  780 DVSKEASDIVLSDDNFASILNAVEEGRRMTDNIQKFVLQLLAENVAQALYLIIGLVFRDENGKSVFPLSPVEVLWIIVVTSCFPAMGLGLEKAAPDLMDRPPHDSEVGIFT---WEVIIDTFAYGIIMTGSCMASFTG-SLYGINSGRLGHDCDGTYNSSCRDVYRSRSAAFATMTWCALILAWEVVDMRRSFFRMHPDTDSPVKEFFRSIWGNQFLFWSIIFGFVSAFPVVYIPVINDKVFLHKPIGAEWGLAIAFTIAFWIGAELYKC----GKRRYFKTQRA 1056          
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: ATN1_YEAST (Sodium transport ATPase 1 OS=Saccharomyces cerevisiae GN=ENA1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 76/285 (26.67%), Postives = 121/285 (42.46%), Query Frame = -2
Query:  138 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAA---LVINFVAAVSSGK--VPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQV--TILLTLQFKGRSIFSV-------------NESVKD-----TMIFNTFVFCQIFNEFNARKLEK-------------KNIFKGIHKNK-LFLAII-GITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGTQLLFK-QRA 869
            +V+KE+SDIV+ DDNF S++  +  GR + +NIQKF+   L  NVA    L+I  V    +GK   PL+ V++LW+ ++     A+ L  E+   DLM +PP      + T   W  +I    Y +  T      F G S++ +             N S +D     +  F T  +C +   +    + +             K  F+ I  N+ LF +II G      ++ +  +       +    +W   I      W    L+KC    G +  FK QRA
Sbjct:  780 DVSKEASDIVLSDDNFASILNAVEEGRRMTDNIQKFVLQLLAENVAQALYLIIGLVFRDENGKSVFPLSPVEVLWIIVVTSCFPAMGLGLEKAAPDLMDRPPHDSEVGIFT---WEVIIDTFAYGIIMTGSCMASFTG-SLYGINSGRLGHDCDGTYNSSCRDVYRSRSAAFATMTWCALILAWEVVDMRRSFFRMHPDTDSPVKEFFRSIWGNQFLFWSIIFGFVSAFPVVYIPVINDKVFLHKPIGAEWGLAIAFTIAFWIGAELYKC----GKRRYFKTQRA 1056          
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: AT1A1_XENLA (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Xenopus laevis GN=atp1a1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 39/127 (30.71%), Postives = 77/127 (60.63%), Query Frame = -2
Query:  489 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTL 869
            +V+K+++D++++DDNF S+VT +  GR +++N++K + + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA EQ  +D+M + P     P   KL+   LI  A  Q+ ++  L
Sbjct:  742 DVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 865          
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: AT1A1_SHEEP (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Ovis aries GN=ATP1A1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 39/127 (30.71%), Postives = 77/127 (60.63%), Query Frame = -2
Query:  489 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTL 869
            +V+K+++D++++DDNF S+VT +  GR +++N++K + + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA EQ  +D+M + P     P   KL+   LI  A  Q+ ++  L
Sbjct:  738 DVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPQTDKLVNERLISMAYGQIGMIQAL 861          
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: AT1A1_RAT (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Rattus norvegicus GN=Atp1a1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 39/127 (30.71%), Postives = 77/127 (60.63%), Query Frame = -2
Query:  489 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTL 869
            +V+K+++D++++DDNF S+VT +  GR +++N++K + + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA EQ  +D+M + P     P   KL+   LI  A  Q+ ++  L
Sbjct:  740 DVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 863          
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: AT1A1_RABIT (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Oryctolagus cuniculus GN=ATP1A1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 39/127 (30.71%), Postives = 77/127 (60.63%), Query Frame = -2
Query:  489 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTL 869
            +V+K+++D++++DDNF S+VT +  GR +++N++K + + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA EQ  +D+M + P     P   KL+   LI  A  Q+ ++  L
Sbjct:  740 DVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 863          
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: AT1A1_PIG (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Sus scrofa GN=ATP1A1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 39/127 (30.71%), Postives = 77/127 (60.63%), Query Frame = -2
Query:  489 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTL 869
            +V+K+++D++++DDNF S+VT +  GR +++N++K + + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA EQ  +D+M + P     P   KL+   LI  A  Q+ ++  L
Sbjct:  738 DVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNEQLISMAYGQIGMIQAL 861          
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: AT1A1_MOUSE (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Mus musculus GN=Atp1a1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 39/127 (30.71%), Postives = 77/127 (60.63%), Query Frame = -2
Query:  489 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTL 869
            +V+K+++D++++DDNF S+VT +  GR +++N++K + + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA EQ  +D+M + P     P   KL+   LI  A  Q+ ++  L
Sbjct:  740 DVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 863          
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: AT1A1_HUMAN (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens GN=ATP1A1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 39/127 (30.71%), Postives = 77/127 (60.63%), Query Frame = -2
Query:  489 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTL 869
            +V+K+++D++++DDNF S+VT +  GR +++N++K + + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA EQ  +D+M + P     P   KL+   LI  A  Q+ ++  L
Sbjct:  740 DVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 863          
BLAST of CN188552 vs. ExPASy Swiss-Prot
Match: AT1A1_HORSE (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Equus caballus GN=ATP1A1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 39/127 (30.71%), Postives = 77/127 (60.63%), Query Frame = -2
Query:  489 EVAKESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTL 869
            +V+K+++D++++DDNF S+VT +  GR +++N++K + + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA EQ  +D+M + P     P   KL+   LI  A  Q+ ++  L
Sbjct:  738 DVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPQTDKLVNERLISMAYGQIGMIQAL 861          
The following BLAST results are available for this feature:
BLAST of CN188552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
ATN2_YEAST2.588e-1326.67Sodium transport ATPase 2 OS=Saccharomyces cerevis... [more]
ATN1_YEAST2.588e-1326.67Sodium transport ATPase 1 OS=Saccharomyces cerevis... [more]
AT1A1_XENLA2.588e-1330.71Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_SHEEP2.588e-1330.71Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_RAT2.588e-1330.71Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_RABIT2.588e-1330.71Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_PIG2.588e-1330.71Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_MOUSE2.588e-1330.71Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_HUMAN2.588e-1330.71Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_HORSE2.588e-1330.71Sodium/potassium-transporting ATPase subunit alpha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188552 ID=CN188552; Name=CN188552; organism=Citrus sinensis; type=EST; length=870bp
TATCAAATAATTTCATTATGAACTAATTAGCTATTAGACTTATATCTATA
GATCGAGCTAAGAAACTTATGAAACTAAACAAAGATCATAGAAAATATTA
ACAGATAGAGAATTGATTATGGATTTGTGATTCATGAAGCTCTTTGCTTG
AAAAGCAGCTGCGTGCCAGAAACGGGAATGCACTTGAAGAGAAAACCAAT
TGGCCAAGACATAGCTGCAATGCCAATACAAGCTGCCCATTGCCCCCAGT
TCAGCCTCTCAGTATCAGCAAACTTCTTCAGAAACTCTACCATTATGAGT
TGAAGAACAATGGTAATTCCAATGATTGCTAGAAACAACTTGTTCTTGTG
TATCCCTTTGAATATATTCTTCTTCTCAAGTTTCCTAGCATTGAACTCAT
TGAAGATTTGGCAGAAGACAAAAGTATTGAAAATCATGGTATCTTTAACA
CTTTCATTCACGCTGAAGATTGATCTTCCTTTAAATTGCAGAGTCAGTAA
GATGGTCACCTGATAAATGGCCTGAGGGATGAGATTCCTCCACATGAGTT
TTGTTATCAGAGGCTCGGATCGGCCAACGGGAGGCTTTGACATGAGATCA
TTGGTGGGCTGCTCAGTGGCCAATGCCAATGCTCCTAGTGTATCCATTAT
CAGGTTCACCCAGAGCAGCTGAACAGCAGTTAGTGGGACTTTTCCTGAAG
AAACAGCAGCAACAAAGTTGATGACAAGAGCAGCAACATTGACTGTGAGC
TGAAATTGAAGGAATTTCTGAATGTTGTTGTAGACACATCGTCCCCATCT
CAGAACTGTCACTACAGAGGTGAAGTTATCATCCATAATGACGATATCTG
AGCTCTCCTTTGCCACTTCA
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