CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_MYCTU (Malate dehydrogenase OS=Mycobacterium tuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + +AV+GAAG I   LLF+LA+G +LGPD+PI L+LL  E +LQALEGV MEL+D  FPLL  V+IG +P ++F+    ALL+GA+PRG GMER+ LL+ N
Sbjct:    6 LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_MYCTA (Malate dehydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mdh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + +AV+GAAG I   LLF+LA+G +LGPD+PI L+LL  E +LQALEGV MEL+D  FPLL  V+IG +P ++F+    ALL+GA+PRG GMER+ LL+ N
Sbjct:    6 LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_MYCBT (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=mdh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + +AV+GAAG I   LLF+LA+G +LGPD+PI L+LL  E +LQALEGV MEL+D  FPLL  V+IG +P ++F+    ALL+GA+PRG GMER+ LL+ N
Sbjct:    6 LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_MYCBP (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=mdh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + +AV+GAAG I   LLF+LA+G +LGPD+PI L+LL  E +LQALEGV MEL+D  FPLL  V+IG +P ++F+    ALL+GA+PRG GMER+ LL+ N
Sbjct:    6 LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_MYCBO (Malate dehydrogenase OS=Mycobacterium bovis GN=mdh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + +AV+GAAG I   LLF+LA+G +LGPD+PI L+LL  E +LQALEGV MEL+D  FPLL  V+IG +P ++F+    ALL+GA+PRG GMER+ LL+ N
Sbjct:    6 LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_MYCUA (Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=mdh PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.244e-25
Identity = 58/101 (57.43%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + +AV+GAAG I   LLF+LA+G +LGPD+PI L+LL  E +L+ALEGV MEL+D  FPLL  V+IG +  ++F+ A  ALL+GA+PRGPGMER+ LL+ N
Sbjct:    6 LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGSDANKIFDGANLALLVGARPRGPGMERSDLLEAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_MYCMM (Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mdh PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.244e-25
Identity = 58/101 (57.43%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + +AV+GAAG I   LLF+LA+G +LGPD+PI L+LL  E +L+ALEGV MEL+D  FPLL  V+IG +  ++F+ A  ALL+GA+PRGPGMER+ LL+ N
Sbjct:    6 LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGSDANKIFDGANLALLVGARPRGPGMERSDLLEAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_PARUW (Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.123e-25
Identity = 59/101 (58.42%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + IA+SG AG IA  LLF+LA+GE+ GP+Q I L++L    +L ALEGV ME+ED  FPLL  +KI  +PY+ FED ++ALLIGAK RGPGMER  LL  N
Sbjct:    5 IKIAISGGAGQIAYSLLFRLASGELFGPNQLIELQVLEVPNALSALEGVKMEIEDCAFPLLSSIKICSDPYQAFEDIDYALLIGAKSRGPGMERRDLLQEN 105
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_SACD2 (Malate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mdh PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.066e-25
Identity = 57/104 (54.81%), Postives = 78/104 (75.00%), Query Frame = 1 
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +AV+GAAG I+  LLF++AAGE+LG DQP+ L++L    +L+AL+GVAMEL+D  FPLL  +    +P   F+DA++ALL+GA+PRGPGMER  LL+ N
Sbjct:    2 KAPVRVAVTGAAGQISYSLLFRIAAGEMLGKDQPVILQMLEITPALEALKGVAMELDDCAFPLLAGMVCSDDPNVAFKDADYALLVGARPRGPGMERKDLLEAN 105
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_METPP (Malate dehydrogenase OS=Methylibium petroleiphilum (strain PM1) GN=mdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 59/106 (55.66%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL+GV MELED  FPLL  ++   +P   F+DA++ALL+G++PRGPGMERA LL IN
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVMMELEDCAFPLLAGMEAHGDPMTAFKDADYALLVGSRPRGPGMERAELLSIN 108
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_MYCTU9.528e-2657.43Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCTA9.528e-2657.43Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCBT9.528e-2657.43Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBP9.528e-2657.43Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBO9.528e-2657.43Malate dehydrogenase OS=Mycobacterium bovis GN=mdh... [more]
MDH_MYCUA1.244e-2557.43Malate dehydrogenase OS=Mycobacterium ulcerans (st... [more]
MDH_MYCMM1.244e-2557.43Malate dehydrogenase OS=Mycobacterium marinum (str... [more]
MDH_PARUW2.123e-2558.42Malate dehydrogenase OS=Protochlamydia amoebophila... [more]
MDH_SACD28.066e-2554.81Malate dehydrogenase OS=Saccharophagus degradans (... [more]
MDH_METPP1.053e-2455.66Malate dehydrogenase OS=Methylibium petroleiphilum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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