CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURP6 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 668) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURP1 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=mdh PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURP0 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURMS (Malate dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURMA (Malate dehydrogenase OS=Burkholderia mallei GN=mdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURM9 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10229) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURM7 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10247) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURM1 (Malate dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURCM (Malate dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106
[Close]
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURCJ (Malate dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_BURP61.205e-2050.96Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP11.205e-2050.96Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP01.205e-2050.96Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURMS1.205e-2050.96Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURMA1.205e-2050.96Malate dehydrogenase OS=Burkholderia mallei GN=mdh... [more]
MDH_BURM91.205e-2050.96Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURM71.205e-2050.96Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURM11.205e-2050.96Malate dehydrogenase OS=Burkholderia multivorans (... [more]
MDH_BURCM1.205e-2050.96Malate dehydrogenase OS=Burkholderia ambifaria (st... [more]
MDH_BURCJ1.205e-2050.96Malate dehydrogenase OS=Burkholderia cepacia (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
back to top