CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH1_BURTA (Malate dehydrogenase 1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CHRVO (Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 53/104 (50.96%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L LL   ++  AL+GV MELED  FPLL  +    +P   F+D + ALL+GA+PR  GMER  LL+ N
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILHLLDLPQAQTALKGVMMELEDCAFPLLAGMVATDDPNVAFKDVKVALLVGARPRSKGMERKDLLEAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURXL (Malate dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLSGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURS3 (Malate dehydrogenase OS=Burkholderia sp. (strain 383) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLSGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURPP (Malate dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLSGVVITDDPEVAFKDADVALLVGARPRSKGMERKDLLSAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURCH (Malate dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURCC (Malate dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURCA (Malate dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_XANOR (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLL 699
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+L  L +E++  AL+GV MELED  FPLL  + +G +  E+ F+D + ALL+GA+PRGPGMER  LL
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGM-VGTDDAEVAFKDIDVALLVGARPRGPGMERKDLL 104          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_XANOP (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLL 699
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+L  L +E++  AL+GV MELED  FPLL  + +G +  E+ F+D + ALL+GA+PRGPGMER  LL
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGM-VGTDDAEVAFKDIDVALLVGARPRGPGMERKDLL 104          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH1_BURTA1.205e-2050.96Malate dehydrogenase 1 OS=Burkholderia thailandens... [more]
MDH_CHRVO1.574e-2050.96Malate dehydrogenase OS=Chromobacterium violaceum ... [more]
MDH_BURXL1.574e-2050.96Malate dehydrogenase OS=Burkholderia xenovorans (s... [more]
MDH_BURS31.574e-2050.96Malate dehydrogenase OS=Burkholderia sp. (strain 3... [more]
MDH_BURPP1.574e-2050.96Malate dehydrogenase OS=Burkholderia phytofirmans ... [more]
MDH_BURCH1.574e-2050.96Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_BURCC1.574e-2050.96Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_BURCA1.574e-2050.96Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_XANOR2.056e-2053.85Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_XANOP2.056e-2053.85Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
back to top