CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_XANOM (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLL 699
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+L  L +E++  AL+GV MELED  FPLL  + +G +  E+ F+D + ALL+GA+PRGPGMER  LL
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGM-VGTDDAEVAFKDIDVALLVGARPRGPGMERKDLL 104          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_XANCP (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLL 699
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+L  L +E++  AL+GV MELED  FPLL  + +G +  E+ F+D + ALL+GA+PRGPGMER  LL
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGM-VGTDDAEVAFKDIDVALLVGARPRGPGMERKDLL 104          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_XANCB (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLL 699
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+L  L +E++  AL+GV MELED  FPLL  + +G +  E+ F+D + ALL+GA+PRGPGMER  LL
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGM-VGTDDAEVAFKDIDVALLVGARPRGPGMERKDLL 104          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_XANC8 (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLL 699
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+L  L +E++  AL+GV MELED  FPLL  + +G +  E+ F+D + ALL+GA+PRGPGMER  LL
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGM-VGTDDAEVAFKDIDVALLVGARPRGPGMERKDLL 104          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_LARHH (Malate dehydrogenase OS=Laribacter hongkongensis (strain HLHK9) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V +AV+GAAG I   LLF++A+GE+LG +QP+ L+LL   ++  A++GV MELED  FPLL  +    +P   F+DA+  LL+GA+PR  GMERA LL+ N
Sbjct:    5 VRVAVTGAAGQIGYSLLFRIASGEMLGQNQPVILQLLDLPQAQNAVKGVMMELEDCAFPLLAGMVATDDPNVAFKDADICLLVGARPRSKGMERADLLEAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURP8 (Malate dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mdh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG I   LLF++A G++LG DQP+ L+LL   ++  A++GV MELED  FPLL  V +  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVVTDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHB_DICDI (Probable malate dehydrogenase 2, mitochondrial OS=Dictyostelium discoideum GN=mdhB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 49/104 (47.12%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +A++GA+G I   LLF++A+G++LG DQPI L+ L    ++ +L+GV+MEL+D  FPLL+ +     P E F  A++ALL+GA+PR  GMER  LL  N
Sbjct:   22 KAPVRVAITGASGQIGYQLLFRIASGDMLGKDQPIILQCLELPGAMNSLKGVSMELDDCAFPLLKGIVQSDKPEEAFAGADYALLVGARPRSKGMERGDLLKAN 125          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_THEFY (Malate dehydrogenase OS=Thermobifida fusca (strain YX) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 51/104 (49.04%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  VN+ V+GAAG I   LLF++A+G++LG D P+ L+LL   ++++A EG AMEL+D  FPLL  V I  +P + F+    ALL+GA+PR  GMER  LL+ N
Sbjct:    3 KAPVNVTVTGAAGQIGYALLFRIASGQLLGVDTPVRLRLLEIPQAIKAAEGTAMELDDCAFPLLAGVDIYDDPRKAFDGVNVALLVGARPRTKGMERRDLLEAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_STRMK (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLL 699
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+L  L  +++  AL+GV MELED  FPLL  + +G +  E+ F+DA+ ALL+GA+PRGPGMER  LL
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPVDKAQAALKGVMMELEDCAFPLLAGM-VGTDDAEVAFKDADIALLVGARPRGPGMERKDLL 104          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_STRM5 (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLL 699
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+L  L  +++  AL+GV MELED  FPLL  + +G +  E+ F+DA+ ALL+GA+PRGPGMER  LL
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPVDKAQAALKGVMMELEDCAFPLLAGM-VGTDDAEVAFKDADIALLVGARPRGPGMERKDLL 104          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_XANOM2.056e-2053.85Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_XANCP2.056e-2053.85Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANCB2.056e-2053.85Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANC82.056e-2053.85Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_LARHH2.056e-2050.50Malate dehydrogenase OS=Laribacter hongkongensis (... [more]
MDH_BURP82.056e-2050.00Malate dehydrogenase OS=Burkholderia phymatum (str... [more]
MDHB_DICDI2.056e-2047.12Probable malate dehydrogenase 2, mitochondrial OS=... [more]
MDH_THEFY2.685e-2049.04Malate dehydrogenase OS=Thermobifida fusca (strain... [more]
MDH_STRMK4.580e-2053.85Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]
MDH_STRM54.580e-2053.85Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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