CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_STEMA (Malate dehydrogenase (Fragment) OS=Stenotrophomonas maltophilia GN=mdh PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLL 699
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+L  L  +++  AL+GV MELED  FPLL  + +G +  E+ F+DA+ ALL+GA+PRGPGMER  LL
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPVDKAQAALKGVMMELEDCAFPLLAGM-VGTDDAEVAFKDADIALLVGARPRGPGMERKDLL 104          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CORGL (Malate dehydrogenase OS=Corynebacterium glutamicum GN=mdh PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  412 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + V+GAAG I+  LL+++A GEV G D P+ LKLL   ++L   EGVAMEL DS FPLLR + I  +  E F+ A  A L+GAKPRG G ERA LL  N
Sbjct:   12 VTVTGAAGQISYSLLWRIANGEVFGTDTPVELKLLEIPQALGGAEGVAMELLDSAFPLLRNITITADANEAFDGANAAFLVGAKPRGKGEERADLLANN 110          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_XANC5 (Malate dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+L  L  E++  AL+GV MELED  FPLL  + +G +  E+ F+D + ALL+G++PRGPGMER  LL  N
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPIEKAQAALKGVMMELEDCAFPLLAGM-VGTDDAEVAFKDVDIALLVGSRPRGPGMERKDLLLAN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_XANAC (Malate dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+L  L  E++  AL+GV MELED  FPLL  + +G +  E+ F+D + ALL+G++PRGPGMER  LL  N
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPIEKAQAALKGVMMELEDCAFPLLAGM-VGTDDAEVAFKDVDVALLVGSRPRGPGMERKDLLLAN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_FRASC (Malate dehydrogenase OS=Frankia sp. (strain CcI3) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            VN+ V+GAAG I   LLF++A+G++LG D P+ L+LL   ++++A EG A+ELEDS FPLL  V +  +    FE    ALL+GA+PR  GMER  LL  N
Sbjct:    6 VNVTVTGAAGQIGYALLFRIASGQLLGADTPVKLRLLEIPQAVRAAEGTALELEDSAFPLLAGVDVFDDAKRAFEGTNVALLVGARPRTKGMERGDLLSAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_FRAAA (Malate dehydrogenase OS=Frankia alni (strain ACN14a) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            VN+ V+GAAG I   LLF++A+G++LG D P+ L+LL   ++++A EG A+ELEDS FPLL  V +  +    FE    ALL+GA+PR  GMER  LL  N
Sbjct:    6 VNVTVTGAAGQIGYALLFRIASGQLLGADTPVRLRLLEIPQAVRAAEGTALELEDSAFPLLAGVDVFDDAKRAFEGTNVALLVGARPRTKGMERGDLLSAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_ARTAT (Malate dehydrogenase OS=Arthrobacter aurescens (strain TC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + IAV+GAAG I   LLF++A+G + G D P+ L+LL    +L+ALEGV MEL+D  FP L  V+IG +   +F+    ALL+GA+PR  GMER  LL  N
Sbjct:    5 IKIAVTGAAGQIGYSLLFRIASGALFGGDTPVQLRLLEITPALKALEGVVMELDDCAFPALDSVEIGDDADHIFDGVTLALLVGARPRSKGMERGDLLSAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_ACICJ (Malate dehydrogenase OS=Acidiphilium cryptum (strain JF-5) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V IAV+GAAG IA  L+F++A+G +LGPDQP+ L LL   +   AL GV MELED  FPLL  +    +P   F+D +   L+GA+PRG GMER  LL  N
Sbjct:    3 KSPVRIAVTGAAGQIAYALVFRIASGALLGPDQPVILHLLDLPQMQGALGGVMMELEDCAFPLLAGMVATDDPKVAFKDIDIGFLVGARPRGKGMERKDLLGAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_LEPBL (Malate dehydrogenase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 48/103 (46.60%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K V +AV+GAAG I   LLF++A+G++ G D  + +++L  E ++ A +GV MELED  FPLL++V +  +    F+D  WALL+G+ PR  GMER  LL IN
Sbjct:    3 KTVKVAVTGAAGQIGYSLLFRIASGQMFGTDTAVEIQMLELEAAIPAAKGVIMELEDCAFPLLQKVTVSSDLDIAFKDINWALLVGSVPRKAGMERGDLLKIN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_LEPBJ (Malate dehydrogenase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 48/103 (46.60%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K V +AV+GAAG I   LLF++A+G++ G D  + +++L  E ++ A +GV MELED  FPLL++V +  +    F+D  WALL+G+ PR  GMER  LL IN
Sbjct:    3 KTVKVAVTGAAGQIGYSLLFRIASGQMFGTDTAVEIQMLELEAAIPAAKGVIMELEDCAFPLLQKVTVSSDLDIAFKDINWALLVGSVPRKAGMERGDLLKIN 105          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_STEMA4.580e-2053.85Malate dehydrogenase (Fragment) OS=Stenotrophomona... [more]
MDH_CORGL7.812e-2053.54Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_XANC51.020e-1952.34Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANAC1.020e-1952.34Malate dehydrogenase OS=Xanthomonas axonopodis pv.... [more]
MDH_FRASC1.020e-1949.50Malate dehydrogenase OS=Frankia sp. (strain CcI3) ... [more]
MDH_FRAAA1.020e-1949.50Malate dehydrogenase OS=Frankia alni (strain ACN14... [more]
MDH_ARTAT1.020e-1949.50Malate dehydrogenase OS=Arthrobacter aurescens (st... [more]
MDH_ACICJ1.020e-1950.96Malate dehydrogenase OS=Acidiphilium cryptum (stra... [more]
MDH_LEPBL1.740e-1946.60Malate dehydrogenase OS=Leptospira borgpetersenii ... [more]
MDH_LEPBJ1.740e-1946.60Malate dehydrogenase OS=Leptospira borgpetersenii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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