CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_SACEN (Malate dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 46/101 (45.54%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V + V+GAAG I   LLF++A+G+++GPD P+ L+LL   ++++A EG AMEL+D  FPLL+ +++  +    F+    ALL+GA+PR  GMER  LL+ N
Sbjct:    6 VTVTVTGAAGQIGYALLFRIASGQLIGPDTPVRLRLLEIPQAVKAAEGTAMELDDCAFPLLQGIEVTDDARTAFDGTNVALLVGARPRTKGMERGDLLEAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  412 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + V+GAAG I    LF++AAG +LGPD PI L+LL    ++ A EG AMEL+DS FPLL +V++  +P   F+  + ALLIG++PR  GMER  LL  N
Sbjct:   10 VTVTGAAGSIGYAALFRIAAGAMLGPDTPIRLRLLEIPPAVSAAEGTAMELDDSAFPLLLDVEVHDDPKRGFDGTDVALLIGSRPRSKGMERGDLLAAN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_COXBN (Malate dehydrogenase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K V +AV+GAAG I   LLF+LA+G+  G D  + L LL  E +L AL+GV  ELED  FPLL  + +  +P   F D  WALL+GA PR  GMER  LL+ N
Sbjct:    3 KHVKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVTELEDCAFPLLCNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CORGB (Malate dehydrogenase OS=Corynebacterium glutamicum (strain R) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 52/99 (52.53%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  412 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + V+GAAG I+  LL+++A GEV G + P+ LKLL   ++L   EGVAMEL DS FPLLR + I  +  E F+ A  A L+GAKPRG G ERA LL  N
Sbjct:   12 VTVTGAAGQISYSLLWRIANGEVFGTETPVELKLLEIPQALGGAEGVAMELLDSAFPLLRNITITADANEAFDGANAAFLVGAKPRGKGEERADLLANN 110          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_STRAW (Malate dehydrogenase OS=Streptomyces avermitilis GN=mdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            VN+ V+GAAG I   LLF++A+G++LG D P+ L+LL    +L+A EG AMEL+D  FPLL+ + I  +P   F+     LL+GA+PR  GMER  LL  N
Sbjct:    6 VNVTVTGAAGQIGYALLFRIASGQLLGADVPVKLRLLEITPALKAAEGTAMELDDCAFPLLQGIDITDDPNVAFDGTNVGLLVGARPRTKGMERGDLLSAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_LEPIN (Malate dehydrogenase OS=Leptospira interrogans GN=mdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K V +AV+GAAG I   LLF++A+G++ G D  + +++L  E ++ A +GV MELED  FPLL++V +  +    F++  WALL+G+ PR  GMER  LL IN
Sbjct:    3 KTVKVAVTGAAGQIGYSLLFRIASGQMFGADTAVEIQMLELEAAIPAAKGVIMELEDCAFPLLQKVTVSSDLDTAFKEINWALLVGSVPRKAGMERGDLLKIN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_LEPIC (Malate dehydrogenase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=mdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K V +AV+GAAG I   LLF++A+G++ G D  + +++L  E ++ A +GV MELED  FPLL++V +  +    F++  WALL+G+ PR  GMER  LL IN
Sbjct:    3 KTVKVAVTGAAGQIGYSLLFRIASGQMFGADTAVEIQMLELEAAIPAAKGVIMELEDCAFPLLQKVTVSSDLDTAFKEINWALLVGSVPRKAGMERGDLLKIN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_COREF (Malate dehydrogenase OS=Corynebacterium efficiens GN=mdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 53/99 (53.54%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  412 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            I V+GAAG IA  LL+++A GEV G D P+ L LL    +L   EGVAMEL DS FPLL  + I  +  E F+ A  A L+GAKPRG G ERA LL  N
Sbjct:    7 ITVTGAAGQIAYSLLWRIANGEVYGADTPVELNLLEIPDALGGAEGVAMELSDSAFPLLHNINITADLNEAFDGANAAFLVGAKPRGKGEERAALLSNN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_LEGPL (Malate dehydrogenase OS=Legionella pneumophila (strain Lens) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V +AV+GAAG I   L+F++A+G++ GP+  + L LL  E +L +LEGVAMEL+D  FPLL+ +    +  +  +   WALL+G+ PR  GMER+ LL IN
Sbjct:    6 VRVAVTGAAGQIGYALVFRIASGQMFGPNTEVELNLLELEPALPSLEGVAMELDDCAFPLLKRIVCTADLNKAMDGVNWALLVGSVPRKQGMERSDLLQIN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_LEGPH (Malate dehydrogenase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V +AV+GAAG I   L+F++A+G++ GP+  + L LL  E +L +LEGVAMEL+D  FPLL+ +    +  +  +   WALL+G+ PR  GMER+ LL IN
Sbjct:    6 VRVAVTGAAGQIGYALVFRIASGQMFGPNTEVELNLLELEPALPSLEGVAMELDDCAFPLLKRIVCTADLNKAMDGVNWALLVGSVPRKQGMERSDLLQIN 106          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_SACEN2.273e-1945.54Malate dehydrogenase OS=Saccharopolyspora erythrae... [more]
MDH_RHOOB2.273e-1950.51Malate dehydrogenase OS=Rhodococcus opacus (strain... [more]
MDH_COXBN2.273e-1950.49Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_CORGB2.273e-1952.53Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_STRAW2.969e-1948.51Malate dehydrogenase OS=Streptomyces avermitilis G... [more]
MDH_LEPIN2.969e-1945.63Malate dehydrogenase OS=Leptospira interrogans GN=... [more]
MDH_LEPIC2.969e-1945.63Malate dehydrogenase OS=Leptospira interrogans ser... [more]
MDH_COREF2.969e-1953.54Malate dehydrogenase OS=Corynebacterium efficiens ... [more]
MDH_LEGPL5.064e-1946.53Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_LEGPH5.064e-1946.53Malate dehydrogenase OS=Legionella pneumophila sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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