CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_LEGPC (Malate dehydrogenase OS=Legionella pneumophila (strain Corby) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V +AV+GAAG I   L+F++A+G++ GP+  + L LL  E +L +LEGVAMEL+D  FPLL+ +    +  +  +   WALL+G+ PR  GMER+ LL IN
Sbjct:    6 VRVAVTGAAGQIGYALVFRIASGQMFGPNTEVELNLLELEPALPSLEGVAMELDDCAFPLLKRIVCTADLNKAMDGVNWALLVGSVPRKQGMERSDLLQIN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_LEGPA (Malate dehydrogenase OS=Legionella pneumophila (strain Paris) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V +AV+GAAG I   L+F++A+G++ GP+  + L LL  E +L +LEGVAMEL+D  FPLL+ +    +  +  +   WALL+G+ PR  GMER+ LL IN
Sbjct:    6 VRVAVTGAAGQIGYALVFRIASGQMFGPNTEVELNLLELEPALPSLEGVAMELDDCAFPLLKRIVCTADLNKAMDGVNWALLVGSVPRKQGMERSDLLQIN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V I V+GAAG I+  LLF++AAG++LG +QP+ L+LL    S + L+GV MEL+D  FPLL  +    +P   F+  + A+L+GA+PR  GMER  LL  N
Sbjct:    5 VRITVTGAAGQISYSLLFRIAAGDMLGSNQPVILQLLDIPESRKILDGVVMELQDCAFPLLAGIIATHDPMMAFDQTDIAILVGARPRRKGMERKDLLQTN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_MYCVP (Malate dehydrogenase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V +AV+GAAG I    LF++AAG +LG   P+ L+LL    +++A EGV MELED  FPLL   +I  +P   F+  + ALLIGA+PR  GMERA LL  N
Sbjct:    9 VTVAVTGAAGHIGYAALFRIAAGAMLGHTTPVTLRLLELPDAVRAAEGVVMELEDGAFPLLAGTEIYDDPTRAFDGVDVALLIGARPRTKGMERADLLGAN 109          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH2_RHOFD (Malate dehydrogenase 2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V + V+GAAG +A  LLF++A+G++LG DQP+ L L     +++A++GV MELED  FPLL E+    +P   F D + ALL+ A+PR  G ER  +L  N
Sbjct:    6 VRVTVTGAAGRVAYALLFRIASGDMLGADQPVQLVLFDLPHAMKAMQGVVMELEDCAFPLLTEIIATDDPVLAFSDTQIALLVSARPRAVGAERLEVLADN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CHLMU (Malate dehydrogenase OS=Chlamydia muridarum GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  394 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + + V++AV+G  G IA   LF LA G++ GPD  I L++     + ++L GV MEL+D  FPLL+ V++  + ++ F+D + A LIG+ PRGPGMER  LL  N
Sbjct:    2 FSQTVSVAVTGGTGQIAYCFLFALAHGDIFGPDTGIDLRIYDIPGTERSLSGVRMELDDGAFPLLQRVQVTTSLHDAFDDIDAAFLIGSVPRGPGMERRDLLKKN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_PROAC (Malate dehydrogenase OS=Propionibacterium acnes GN=mdh PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V IAV+GAAG I   LLF++A+G +LG D PI L+LL    +L+ALEGV MEL+D  F  L  ++IG +P ++F+    A L+GA PR  GMER+ LL  N
Sbjct:    6 VKIAVTGAAGQICYSLLFRIASGSLLG-DTPIELRLLEITPALKALEGVVMELDDCAFGNLVNIEIGDDPKKVFDGVNAAFLVGAMPRKAGMERSDLLTKN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CORDI (Malate dehydrogenase OS=Corynebacterium diphtheriae GN=mdh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  385 TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            T+S KK   IAV+GAAG IA  LL+++A G+V G + P+ L+LL   +++   EGVAMEL DS FPLL+ + +       F+    A L+GAKPRG G ERA LL  N
Sbjct:    2 TESVKK---IAVTGAAGQIAYSLLWRIANGDVYGKNTPVELQLLEIPQAIGGAEGVAMELLDSAFPLLKNIVVTDKAEVAFDGTNAAFLVGAKPRGKGEERADLLTAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CORJK (Malate dehydrogenase OS=Corynebacterium jeikeium (strain K411) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  385 TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            T + +  V + V+GA G I   LLF++A GEV G D+ + L+LL +E+ +QA  GVA+EL D  FPLL EV I     E F+DA    L+GAKPR  G ERA LL  N
Sbjct:    2 TTNNQNAVTVTVTGAGGQIGYSLLFRIAKGEVFG-DRVVNLRLLETEQGVQAARGVALELADCAFPLLGEVSITTELSEGFKDANAVFLVGAKPRQKGEERADLLAAN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHA_DICDI (Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + + V+GAAG IA  L+F +A+G++ GP QP+ L LL   +   AL+GV MEL+D  +PLL+ V    +    F     A+L+GA PRGPGM+R  LL +N
Sbjct:   62 IKVLVTGAAGQIAYSLMFMIASGQMFGPHQPVILHLLDIPKMADALKGVVMELQDCSYPLLQSVVATTDIQTAFLHINVAILVGAFPRGPGMQRKDLLKVN 162          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_LEGPC5.064e-1946.53Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_LEGPA5.064e-1946.53Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_NITEC1.473e-1847.52Malate dehydrogenase OS=Nitrosomonas eutropha (str... [more]
MDH_MYCVP1.473e-1850.50Malate dehydrogenase OS=Mycobacterium vanbaalenii ... [more]
MDH2_RHOFD7.312e-1845.54Malate dehydrogenase 2 OS=Rhodoferax ferrireducens... [more]
MDH_CHLMU9.550e-1843.81Malate dehydrogenase OS=Chlamydia muridarum GN=mdh... [more]
MDH_PROAC1.247e-1750.50Malate dehydrogenase OS=Propionibacterium acnes GN... [more]
MDH_CORDI1.629e-1748.15Malate dehydrogenase OS=Corynebacterium diphtheria... [more]
MDH_CORJK2.127e-1748.15Malate dehydrogenase OS=Corynebacterium jeikeium (... [more]
MDHA_DICDI2.127e-1744.55Probable malate dehydrogenase 1 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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