CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CHLPN (Malate dehydrogenase OS=Chlamydia pneumoniae GN=mdh PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  391 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            ++K++V +AV+G  G IA + LF LA G+V G D+ + L++     + +AL GV MEL+D  +PLL  +++  +  + F+  + A LIGA PRGPGMER  LL  N
Sbjct:    2 AFKEVVRVAVTGGKGQIAYNFLFALAHGDVFGVDRGVDLRIYDVPGTERALSGVRMELDDGAYPLLHRLRVTTSLNDAFDGIDAAFLIGAVPRGPGMERGDLLKQN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHC_XENLA (Malate dehydrogenase, cytoplasmic OS=Xenopus laevis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V + V+GAAG IA  LLF +A G+V G DQP+ L LL     +  LEGV MEL+D   PLL+EV         F+D + A+L+G+ PR  GMER  LL  N
Sbjct:    5 VKVLVTGAAGQIAYSLLFGIAKGDVFGKDQPLILVLLDITPMMTVLEGVVMELQDCALPLLKEVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CHLTR (Malate dehydrogenase OS=Chlamydia trachomatis GN=mdh PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V++AV+G  G IA   LF LA G+V G D  I L++     + +AL GV MEL+D  FPLL+ V++  + ++ F+  + A LIG+ PRGPGMER  LL  N
Sbjct:    6 VSVAVTGGTGQIAYSFLFSLAHGDVFGLDCGIDLRIYDIPGTERALSGVRMELDDGAFPLLQRVQVTTSLHDAFDGIDAAFLIGSVPRGPGMERRDLLKKN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CHLTB (Malate dehydrogenase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=mdh PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V++AV+G  G IA   LF LA G+V G D  I L++     + +AL GV MEL+D  FPLL+ V++  + ++ F+  + A LIG+ PRGPGMER  LL  N
Sbjct:    6 VSVAVTGGTGQIAYSFLFSLAHGDVFGLDCGIDLRIYDIPGTERALSGVRMELDDGAFPLLQRVQVTTSLHDAFDGIDAAFLIGSVPRGPGMERRDLLKKN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CHLT2 (Malate dehydrogenase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=mdh PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V++AV+G  G IA   LF LA G+V G D  I L++     + +AL GV MEL+D  FPLL+ V++  + ++ F+  + A LIG+ PRGPGMER  LL  N
Sbjct:    6 VSVAVTGGTGQIAYSFLFSLAHGDVFGLDCGIDLRIYDIPGTERALSGVRMELDDGAFPLLQRVQVTTSLHDAFDGIDAAFLIGSVPRGPGMERRDLLKKN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHC_DICDI (Probable malate dehydrogenase 3 OS=Dictyostelium discoideum GN=mdhC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            +++N+ ++GAAG IA  L+F +  G++ G DQ I L LL   + + +L+G+ ME++D  +PL+ +  I  +  E F    +A+L+GA PR  GMERA LL  N
Sbjct:    4 EVINVLITGAAGQIAYSLIFNVCKGDMFGLDQRIKLHLLDIPQMVDSLKGIVMEIQDGAYPLIADTVITADVKEAFTGVHYAILVGAMPRREGMERADLLKAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHC_XENTR (Malate dehydrogenase, cytoplasmic OS=Xenopus tropicalis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V + V+GAAG IA  LL+ +A G+V G DQP+ L LL     +  LEGV MEL+D   PLL+EV         F+D + A+L+G+ PR  GMER  LL  N
Sbjct:    5 VKVLVTGAAGQIAYSLLYGIAKGDVFGKDQPLILVLLDITPMMTVLEGVVMELQDCALPLLKEVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHC_CHICK (Malate dehydrogenase, cytoplasmic OS=Gallus gallus GN=MDH1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + + V+GAAG IA  LL+ +A G+V G +QP+ L LL     +  LEGV MEL+D   PLLREV         F+D + A+L+G+ PR  GMER  LL  N
Sbjct:    5 IRVLVTGAAGQIAYSLLYSIAKGDVFGKEQPLVLVLLDITPMMTVLEGVVMELQDCALPLLREVIPTDKEEVAFKDLDIAILVGSMPRREGMERKDLLKAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CHLTA (Malate dehydrogenase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V++AV+G  G IA   LF LA G+V G D  I L++     + +AL GV MEL+D  FPLL+ V++  + ++ F+  + A LIG+ PRGPG+ER  LL  N
Sbjct:    6 VSVAVTGGTGQIAYSFLFSLAHGDVFGLDCGIDLRIYDIPGTERALSGVRMELDDGAFPLLQRVQVTTSLHDAFDGIDAAFLIGSVPRGPGVERRDLLKKN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CHLAB (Malate dehydrogenase OS=Chlamydophila abortus GN=mdh PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + V++AV+G  G IA   LF LA G+V G D  I L++       + L GV MEL+D  +PLL+ +++  +  + F+  + A LIGA PRGPGMER+ LL  N
Sbjct:    7 RTVSVAVTGGTGQIAYSFLFALAHGDVFGSDCGIDLRIYDLPGLERVLSGVRMELDDGAYPLLQSLRVTTSLEDAFDGIDAAFLIGAAPRGPGMERSDLLKRN 109          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_CHLPN6.190e-1742.45Malate dehydrogenase OS=Chlamydia pneumoniae GN=md... [more]
MDHC_XENLA1.801e-1647.52Malate dehydrogenase, cytoplasmic OS=Xenopus laevi... [more]
MDH_CHLTR3.072e-1645.54Malate dehydrogenase OS=Chlamydia trachomatis GN=m... [more]
MDH_CHLTB3.072e-1645.54Malate dehydrogenase OS=Chlamydia trachomatis (str... [more]
MDH_CHLT23.072e-1645.54Malate dehydrogenase OS=Chlamydia trachomatis (str... [more]
MDHC_DICDI3.072e-1639.81Probable malate dehydrogenase 3 OS=Dictyostelium d... [more]
MDHC_XENTR4.012e-1646.53Malate dehydrogenase, cytoplasmic OS=Xenopus tropi... [more]
MDHC_CHICK4.012e-1645.54Malate dehydrogenase, cytoplasmic OS=Gallus gallus... [more]
MDH_CHLTA8.938e-1644.55Malate dehydrogenase OS=Chlamydia trachomatis (str... [more]
MDH_CHLAB2.601e-1542.72Malate dehydrogenase OS=Chlamydophila abortus GN=m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
back to top