CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CHLFF (Malate dehydrogenase OS=Chlamydophila felis (strain Fe/C-56) GN=mdh PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.794e-15
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + V++AV+G  G IA   LF LA G+V G D  I L++       + L G+ MEL+D  +PLL+ +++  +  + F+  + A LIGA PRGPGMER+ LL  N
Sbjct:    5 RTVSVAVTGGTGQIAYSFLFALAHGDVFGSDCGIDLRVYDLPGLERVLSGIRMELDDCAYPLLQSLRVTTSLEDAFDGIDAAFLIGAAPRGPGMERSDLLKRN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CHLCV (Malate dehydrogenase OS=Chlamydophila caviae GN=mdh PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + V++AV+G  G IA   LF LA G+V G D  I L++       +AL GV MEL+D  +PLL+ +++  +  +  +  + A LIGA PRGPGMER+ LL  N
Sbjct:    7 RTVSVAVTGGTGQIAYSFLFALAHGDVFGSDCSIDLRVYDLPGLERALSGVRMELDDCAYPLLQSLRVTTSLEDACDGIDAAFLIGAAPRGPGMERSDLLKRN 109          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + + V+GAAG IA  LL+ +  G V G DQPI L LL     +  L+GV MEL+D   PLL++V         F+D + A+L+G+ PR  GMER  LL  N
Sbjct:    5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHC_HUMAN (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + + V+GAAG IA  LL+ +  G V G DQPI L LL     +  L+GV MEL+D   PLL++V         F+D + A+L+G+ PR  GMER  LL  N
Sbjct:    5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + + V+GAAG IA  LL+ +  G V G DQPI L LL     +  L+GV MEL+D   PLL++V         F+D + A+L+G+ PR  GMER  LL  N
Sbjct:    5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRRDGMERKDLLKAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + + V+GAAG IA  LL+ +  G V G DQPI L LL     +  L+GV MEL+D   PLL++V         F+D + A+L+G+ PR  GMER  LL  N
Sbjct:    5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHC_RAT (Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + + V+GAAG IA  LL+ +  G V G DQPI L LL     +  L+GV MEL+D   PLL++V         F+D + A+L+G+ PR  GMER  LL  N
Sbjct:    5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLQDVIATDKEEVAFKDLDVAVLVGSMPRREGMERKDLLKAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + + V+GAAG IA  LL+ +  G V G DQPI L LL     +  L+GV MEL+D   PLL++V         F+D + A+L+G+ PR  GMER  LL  N
Sbjct:    5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLQDVIATDKEEIAFKDLDVAVLVGSMPRREGMERKDLLKAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V + V+GAAG I   L+  +A G +LGPDQP+ L +L    + ++L GV MEL D+ FPLL+ V    +  E       A+++G  PR  GMER  ++  N
Sbjct:    3 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVDAAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K+ V + V+GAAG I   L+  +A G +LG DQP+ L +L    + +AL GV MEL D+ FPLL+ V    +  E       A+++G  PR  GMER  ++  N
Sbjct:    3 KEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKN 106          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_CHLFF5.794e-1541.75Malate dehydrogenase OS=Chlamydophila felis (strai... [more]
MDH_CHLCV9.883e-1542.72Malate dehydrogenase OS=Chlamydophila caviae GN=md... [more]
MDHC_PIG9.883e-1543.56Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDHC_HUMAN9.883e-1543.56Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
MDHC_FELCA9.883e-1543.56Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDHC_BOVIN9.883e-1543.56Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]
MDHC_RAT1.291e-1443.56Malate dehydrogenase, cytoplasmic OS=Rattus norveg... [more]
MDHC_MOUSE1.686e-1443.56Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDHC_MEDSA1.578e-1239.42Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC2_ARATH4.591e-1239.42Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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