CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_DELAS (Malate dehydrogenase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.376e-24
Identity = 58/106 (54.72%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++  AL+GV MELED  FPLL  ++   +P + F+D ++ALL+GA+PRGPGMERA LL  N
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPLQAFKDTDYALLVGARPRGPGMERADLLAAN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_DIAST (Malate dehydrogenase OS=Diaphorobacter sp. (strain TPSY) GN=mdh PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.065e-24
Identity = 58/106 (54.72%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++  AL+GV MELED  FPLL  ++   +P   F+D ++ALL+GA+PRGPGMERA LL  N
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAAN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BORA1 (Malate dehydrogenase OS=Bordetella avium (strain 197N) GN=mdh PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.065e-24
Identity = 58/106 (54.72%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL+GV MELED  FPLL+EV    +P   F+DA+ ALL+GA+PRGPGMER  LL +N
Sbjct:    3 KPAMRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLQEVTAHADPKTAFKDADVALLVGARPRGPGMERKDLLTVN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_ACISJ (Malate dehydrogenase OS=Acidovorax sp. (strain JS42) GN=mdh PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.065e-24
Identity = 58/106 (54.72%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++  AL+GV MELED  FPLL  ++   +P   F+D ++ALL+GA+PRGPGMERA LL  N
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAAN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_METCA (Malate dehydrogenase OS=Methylococcus capsulatus GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 54/104 (51.92%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V++AV+GAAG IA  LLF++A G++ GP QP+ LKLL    + + LEGVAMEL+D   PLL+E+++  +P E+F+ AE   ++GA PRGPGMER  LL +N
Sbjct:    2 KTPVHVAVTGAAGQIAYSLLFRIAVGDLFGPHQPVILKLLDVPSAERVLEGVAMELDDCASPLLQEIEVSSDPAEVFDGAEAVFMLGATPRGPGMERRDLLQVN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 58/106 (54.72%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL+GV MELED  FPLL EV    +P   F+DA+ ALL+GA+PRGPGMER  LL +N
Sbjct:    3 KPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BORPA (Malate dehydrogenase OS=Bordetella parapertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 58/106 (54.72%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL+GV MELED  FPLL EV    +P   F+DA+ ALL+GA+PRGPGMER  LL +N
Sbjct:    3 KPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BORBR (Malate dehydrogenase OS=Bordetella bronchiseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 58/106 (54.72%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL+GV MELED  FPLL EV    +P   F+DA+ ALL+GA+PRGPGMER  LL +N
Sbjct:    3 KPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_ACIAC (Malate dehydrogenase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 58/106 (54.72%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL+GV MELED  FPLL  ++   +P   F+D ++ALL+GA+PRGPGMERA LL  N
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVMMELEDCAFPLLAGMEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAAN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_VARPS (Malate dehydrogenase OS=Variovorax paradoxus (strain S110) GN=mdh PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24
Identity = 57/106 (53.77%), Postives = 80/106 (75.47%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL+GV MEL+D  FPLL  ++   +P   F+DA++ALL+G++PRGPGMERA LL +N
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVMMELDDCAFPLLAGMEAHGDPMTAFKDADYALLVGSRPRGPGMERAELLAVN 108          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_DELAS1.376e-2454.72Malate dehydrogenase OS=Delftia acidovorans (strai... [more]
MDH_DIAST3.065e-2454.72Malate dehydrogenase OS=Diaphorobacter sp. (strain... [more]
MDH_BORA13.065e-2454.72Malate dehydrogenase OS=Bordetella avium (strain 1... [more]
MDH_ACISJ3.065e-2454.72Malate dehydrogenase OS=Acidovorax sp. (strain JS4... [more]
MDH_METCA4.003e-2451.92Malate dehydrogenase OS=Methylococcus capsulatus G... [more]
MDH_BORPE4.003e-2454.72Malate dehydrogenase OS=Bordetella pertussis GN=md... [more]
MDH_BORPA4.003e-2454.72Malate dehydrogenase OS=Bordetella parapertussis G... [more]
MDH_BORBR4.003e-2454.72Malate dehydrogenase OS=Bordetella bronchiseptica ... [more]
MDH_ACIAC4.003e-2454.72Malate dehydrogenase OS=Acidovorax avenae subsp. c... [more]
MDH_VARPS5.228e-2453.77Malate dehydrogenase OS=Variovorax paradoxus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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