CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH1_RHOFD (Malate dehydrogenase 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24
Identity = 57/106 (53.77%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            KK V +AV+GAAG I   +LF++A+GE+LG DQP+ L+LL    E++ QAL+GV MEL+D  FPLL  ++   +P   F+D ++ALLIG++PRGPGMERA LL +N
Sbjct:    3 KKPVRVAVTGAAGQIGYAILFRIASGEMLGKDQPVILQLLEVPVEKAQQALQGVMMELQDCAFPLLAGMEAHSDPMTAFKDVDYALLIGSRPRGPGMERAELLAVN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BORPD (Malate dehydrogenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.828e-24
Identity = 57/106 (53.77%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL+GV MEL+D  FPLL+EV    +P   F+DA+ ALL+GA+PRGPGMER  LL +N
Sbjct:    3 KPAMRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELDDCAFPLLQEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_POLNA (Malate dehydrogenase OS=Polaromonas naphthalenivorans (strain CJ2) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 58/106 (54.72%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E   +AL+GV MEL+D  FPLL E+    +P   F+DA++ALL+G++PRGPGMERA LL +N
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPVEGPQKALKGVMMELDDCAFPLLVEMTAHSDPMTAFKDADYALLVGSRPRGPGMERAELLAVN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_MYCLE (Malate dehydrogenase OS=Mycobacterium leprae GN=mdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 56/101 (55.45%), Postives = 75/101 (74.26%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + +AV+GAAG I   LLF+LA+G +LG D+PI L+LL  E +L+ALEGV MEL+D  F LL  V+IG +P ++F+    ALL+GA+PRGPGMER  LL+ N
Sbjct:    6 LKVAVTGAAGQIGYSLLFRLASGSLLGLDRPIELRLLEIEPALKALEGVVMELDDCAFLLLAGVEIGADPNKVFDGVNLALLVGARPRGPGMERGDLLEAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_LEPCP (Malate dehydrogenase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23
Identity = 57/106 (53.77%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL+GV MELED  FPLL  ++   +P   F+D ++ALL+GA+PRGPGMERA LL  N
Sbjct:    3 KSPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPVEKAQEALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAAN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 56/104 (53.85%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +AV+GAAG I   LLF++AAGE+LG DQP+ L+LL   ++++ALEGV MELED  FPLL  ++   +P   F+DA++ALL+GA PR  GMER  LL +N
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 56/104 (53.85%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +AV+GAAG I   LLF++AAGE+LG DQP+ L+LL   ++++ALEGV MELED  FPLL  ++   +P   F+DA++ALL+GA PR  GMER  LL +N
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_THET2 (Malate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mdh PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 56/104 (53.85%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +AV+GAAG I   LLF++AAGE+LG DQP+ L+LL   ++++ALEGV MELED  FPLL  ++   +P   F+DA++ALL+GA PR  GMER  LL +N
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_CELJU (Malate dehydrogenase OS=Cellvibrio japonicus (strain Ueda107) GN=mdh PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 55/104 (52.88%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V + V+GAAG I+  LLF++AAG++LG DQP+ L+LL    +L+AL+GVAMEL+D  FPLL  +    +P   F+D+++ALL+GA+PRGPGMER  LL  N
Sbjct:    2 KAPVRVTVTGAAGQISYSLLFRIAAGDMLGKDQPVILQLLEITPALKALQGVAMELDDCAFPLLAGIVTTDDPSVAFKDSDYALLVGARPRGPGMERKDLLAAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_VEREI (Malate dehydrogenase OS=Verminephrobacter eiseniae (strain EF01-2) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 57/106 (53.77%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL   +E   +AL GV MEL+D  FPLL  +    +P   F+DA++ALL+G++PRGPGMERA LL +N
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPAEGPQKALNGVMMELDDCAFPLLAGMTAHSDPMAAFKDADYALLVGSRPRGPGMERAELLAVN 108          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH1_RHOFD5.228e-2453.77Malate dehydrogenase 1 OS=Rhodoferax ferrireducens... [more]
MDH_BORPD6.828e-2453.77Malate dehydrogenase OS=Bordetella petrii (strain ... [more]
MDH_POLNA1.165e-2354.72Malate dehydrogenase OS=Polaromonas naphthalenivor... [more]
MDH_MYCLE1.165e-2355.45Malate dehydrogenase OS=Mycobacterium leprae GN=md... [more]
MDH_LEPCP1.165e-2353.77Malate dehydrogenase OS=Leptothrix cholodnii (stra... [more]
MDH_THETH1.987e-2353.85Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]
MDH_THET81.987e-2353.85Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THET21.987e-2353.85Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_CELJU1.987e-2352.88Malate dehydrogenase OS=Cellvibrio japonicus (stra... [more]
MDH_VEREI2.595e-2353.77Malate dehydrogenase OS=Verminephrobacter eiseniae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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