CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_POLSJ (Malate dehydrogenase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 57/106 (53.77%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E   +AL+GV MEL+D  FPLL  ++   +P   F+DA++ALL+G++PRGPGMERA LL +N
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPVEGPQKALKGVMMELDDCAFPLLAGMEAHSDPMTAFKDADYALLVGSRPRGPGMERAELLAVN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_HALHL (Malate dehydrogenase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +AV+GAAG I   LLF++AAGE+LG DQP+ L+LL   ++ +AL+G  MELED  FPL+  +    +  E F DA++ LL+GAKPRGPGMER  LL+ N
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVTLQLLEIPQAQEALQGTVMELEDCAFPLVDGIIATDSAEEAFRDADYVLLVGAKPRGPGMERKDLLEAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_ALHEH (Malate dehydrogenase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +AV+GAAG I   LLF++A+G++LG DQP+ L+LL    +L+AL+GV MELED  FPL+  +       E F+DA+ ALL+GA+PRGPGMER  LL+ N
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEITPALEALKGVVMELEDCAFPLVSGITTSDKAEEAFKDADIALLVGARPRGPGMERKDLLEAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_AKKM8 (Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + + V+GAAG IA  LLF++A+G +LGPDQPI L+LL    ++ ALEGV MEL D+ FPL+ E+    +P E F  A W LL+G+ PR  GMER  LLDIN
Sbjct:    2 KTPITVTVTGAAGQIAYSLLFRIASGSMLGPDQPINLRLLEIPPAMNALEGVVMELRDAAFPLVNEIVPTSDPDEAFAGANWCLLVGSVPRKAGMERKDLLDIN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_AZOSE (Malate dehydrogenase OS=Azoarcus sp. (strain EbN1) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL   ++ +A++GV MELED  FPLL  +    +P   F+DA++ LL+GA+PRGPGMERA LL  N
Sbjct:    3 KAPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLDLPQAQKAVKGVMMELEDCAFPLLAGMVATDDPNVAFKDADYCLLVGARPRGPGMERADLLTAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_ACIBY (Malate dehydrogenase OS=Acinetobacter baumannii (strain AYE) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 57/106 (53.77%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K+ V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ QAL+GV MEL+D  FPLL  +    +P   F+DA++ALL+G++PRGPGMERA LL +N
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_ACIBT (Malate dehydrogenase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=mdh PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 57/106 (53.77%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K+ V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ QAL+GV MEL+D  FPLL  +    +P   F+DA++ALL+G++PRGPGMERA LL +N
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_ACIBS (Malate dehydrogenase OS=Acinetobacter baumannii (strain SDF) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 57/106 (53.77%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K+ V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ QAL+GV MEL+D  FPLL  +    +P   F+DA++ALL+G++PRGPGMERA LL +N
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_ACIBC (Malate dehydrogenase OS=Acinetobacter baumannii (strain ACICU) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 57/106 (53.77%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K+ V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ QAL+GV MEL+D  FPLL  +    +P   F+DA++ALL+G++PRGPGMERA LL +N
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_ACIB5 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB0057) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 57/106 (53.77%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K+ V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ QAL+GV MEL+D  FPLL  +    +P   F+DA++ALL+G++PRGPGMERA LL +N
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVN 107          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_POLSJ2.595e-2353.77Malate dehydrogenase OS=Polaromonas sp. (strain JS... [more]
MDH_HALHL2.595e-2352.88Malate dehydrogenase OS=Halorhodospira halophila (... [more]
MDH_ALHEH2.595e-2352.88Malate dehydrogenase OS=Alkalilimnicola ehrlichei ... [more]
MDH_AKKM82.595e-2352.88Malate dehydrogenase OS=Akkermansia muciniphila (s... [more]
MDH_AZOSE3.389e-2352.88Malate dehydrogenase OS=Azoarcus sp. (strain EbN1)... [more]
MDH_ACIBY3.389e-2353.77Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBT3.389e-2353.77Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBS3.389e-2353.77Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBC3.389e-2353.77Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIB53.389e-2353.77Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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