CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_ACIB3 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB307-0294) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 57/106 (53.77%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K+ V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ QAL+GV MEL+D  FPLL  +    +P   F+DA++ALL+G++PRGPGMERA LL +N
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEVPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_ACIAD (Malate dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 57/106 (53.77%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K+ V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ QAL+GV MEL+D  FPLL  +    +P   F+DA++ALL+G++PRGPGMERA LL +N
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEIPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH1_BURVG (Malate dehydrogenase 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 54/99 (54.55%), Postives = 72/99 (72.73%), Query Frame = 1
Query:  412 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            +AV+GAAG IA  LLF++A G++LG DQP+ L+LL    +L AL GV MELED  FPLL+ V+I  +P   F DA++A+L+G++PRG GMER  LL  N
Sbjct:    8 VAVTGAAGQIAYSLLFRIARGDLLGDDQPVILQLLELPHALDALRGVVMELEDCAFPLLQSVEISDDPRVAFRDADYAMLVGSRPRGKGMERRDLLAAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_TERTT (Malate dehydrogenase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 54/104 (51.92%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V + V+GAAG I+  LLF++AAGE+LG DQP+ L++L    +L+AL+GVAMEL+D  FPLL  +    +    F+D+++ALL+GA+PRGPGMER  LL+ N
Sbjct:    2 KAPVRVTVTGAAGQISYSLLFRIAAGEMLGADQPVILQMLEITPALEALKGVAMELDDCAFPLLHSMVCTDDANVAFKDSDYALLVGARPRGPGMERNDLLEAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_PSYWF (Malate dehydrogenase OS=Psychrobacter sp. (strain PRwf-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K+ V +AV+GAAG I+  +LF++A+GE+LG DQP+ L+LL    +L AL+GV MELED  FPLL  V    +    F+DA++ALL+GA+PRGPGMER  LL+ N
Sbjct:    2 KQPVRVAVTGAAGNISYAMLFRIASGEMLGKDQPVILQLLEITPALDALKGVVMELEDCAFPLLAGVVQTDDATVAFKDADYALLVGARPRGPGMERKDLLEAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_NITMU (Malate dehydrogenase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=mdh PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +AV+GAAG IA  LLF++AAG++LG DQP+ L+LL   +SL +L+GV MEL+D  FPLLR++ I  +P   F D   A+L+GA+PR  GMER  LL+ N
Sbjct:    2 KTPIRVAVTGAAGQIAYSLLFRIAAGDMLGEDQPVILQLLDIPQSLPSLKGVVMELDDCAFPLLRDITITDDPKTAFRDINIAMLVGARPRTKGMERKDLLEAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_RALPJ (Malate dehydrogenase OS=Ralstonia pickettii (strain 12J) GN=mdh PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +AV+GAAG I   LLF++AAGE+LG DQP+ L+LL    E++ +AL+GV ME+ED  FPLL  ++   +P   F+D + ALL+GA+PRGPGMERA LL  N
Sbjct:    3 KAPMRVAVTGAAGQIGYALLFRIAAGEMLGKDQPVILQLLEIPDEKAQKALKGVMMEIEDCAFPLLAGMQAHSDPMTAFKDVDVALLVGARPRGPGMERADLLSAN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_PSYCK (Malate dehydrogenase OS=Psychrobacter cryohalolentis (strain K5) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 55/106 (51.89%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  391 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            S K+ V +AV+GAAG I+  +LF++A+GE+LG DQP+ L+LL    +L AL+GV MELED  FPLL  V    +    F+D ++ALL+G++PRGPGMER  LL+ N
Sbjct:    2 SMKQPVRVAVTGAAGNISYAMLFRIASGEMLGKDQPVILQLLEIAPALDALKGVVMELEDCAFPLLAGVVQTDDATVAFKDVDYALLVGSRPRGPGMERKDLLEAN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_KOCRD (Malate dehydrogenase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V +AV+GAAG I   LLF++A G++LG  +P+ L+LL    +L ALEG  MEL+D  FPLL +V+IG +P E+F+ A+ ALL+GA+PR  GMER  LL+ N
Sbjct:    6 VTVAVTGAAGQIGYSLLFRIAHGDMLGRQRPVRLRLLEIPSALPALEGTVMELQDCAFPLLADVEIGSDPREVFDGAQLALLVGARPRTKGMERGDLLEAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_ALCBS (Malate dehydrogenase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 54/104 (51.92%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +AV+GAAG I+  LLF++A+G++LG DQP+ L+LL    +L+AL GV MELED  FPL+  +    +    F+DA++ALL+GA+PRGPGMER  LL+ N
Sbjct:    4 KAPVRVAVTGAAGQISYSLLFRIASGDMLGKDQPVILQLLEITPALEALNGVIMELEDCAFPLVAGITGTDDANVAFKDADYALLVGARPRGPGMERKDLLEAN 107          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_ACIB33.389e-2353.77Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIAD3.389e-2353.77Malate dehydrogenase OS=Acinetobacter sp. (strain ... [more]
MDH1_BURVG3.389e-2354.55Malate dehydrogenase 1 OS=Burkholderia vietnamiens... [more]
MDH_TERTT4.426e-2351.92Malate dehydrogenase OS=Teredinibacter turnerae (s... [more]
MDH_PSYWF5.780e-2353.85Malate dehydrogenase OS=Psychrobacter sp. (strain ... [more]
MDH_NITMU5.780e-2351.92Malate dehydrogenase OS=Nitrosospira multiformis (... [more]
MDH_RALPJ7.549e-2352.83Malate dehydrogenase OS=Ralstonia pickettii (strai... [more]
MDH_PSYCK1.682e-2251.89Malate dehydrogenase OS=Psychrobacter cryohalolent... [more]
MDH_KOCRD1.682e-2252.48Malate dehydrogenase OS=Kocuria rhizophila (strain... [more]
MDH_ALCBS1.682e-2251.92Malate dehydrogenase OS=Alcanivorax borkumensis (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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