CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_RALSO (Malate dehydrogenase OS=Ralstonia solanacearum GN=mdh PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +AV+GAAG I   LLF++AAGE+LG DQP+ L+LL    E++ +AL+GV ME+ED  FPLL  ++   +P   F+D + ALL+GA+PRGPGMER  LL  N
Sbjct:    3 KAPMRVAVTGAAGQIGYALLFRIAAGEMLGKDQPVILQLLEIPDEKAQKALKGVMMEIEDCAFPLLAGMEAHADPMTAFKDVDVALLVGARPRGPGMERKDLLSAN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_PSYA2 (Malate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 1
Query:  391 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            S K+ V +AV+GAAG I+  +LF++A+GE+LG DQP+ L+LL    +L AL+GV MELED  FPLL  +    +    F+D ++ALL+G++PRGPGMER  LL+ N
Sbjct:    2 SMKQPVRVAVTGAAGNISYAMLFRIASGEMLGKDQPVILQLLEIAPALDALKGVVMELEDCAFPLLAGIVQTDDATVAFKDVDYALLVGSRPRGPGMERKDLLEAN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K+ V +AV+GAAG I   LLF++AAG++LG DQP+ L+LL    +L+AL GV MEL D  FPLL +V    +P   F+DA++ALL+GA PR  GMER  LL  N
Sbjct:    4 KQPVRVAVTGAAGQIGYSLLFRIAAGDMLGQDQPVILQLLEITPALKALNGVVMELRDGAFPLLADVITSDDPMVAFKDADYALLVGAMPRKAGMERGDLLGAN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_DEIDV (Malate dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K+ V +AV+GAAG I   LLF++AAG++LG DQP+ L+LL    +L+AL+GV MEL D  +PLL +V    +P   F+DA++ALL+GA PR  GMER  LL  N
Sbjct:    4 KQPVRVAVTGAAGQIGYSLLFRIAAGDMLGKDQPVILQLLEITPALKALQGVVMELRDGAYPLLADVVTSDDPLVAFKDADYALLVGAMPRKAGMERGDLLGAN 107          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_DEIGD (Malate dehydrogenase OS=Deinococcus geothermalis (strain DSM 11300) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K+ V +AV+GAAG I   LLF++AAG++LG DQP+ L+LL    +L+AL GV MEL D  FPLL ++    +P   F+DA++ALL+GA PR  GMER  LL  N
Sbjct:    8 KQPVRVAVTGAAGQIGYSLLFRIAAGDMLGKDQPVILQLLEITPALKALAGVVMELRDCAFPLLADIVTSDDPLVAFKDADYALLVGAMPRKAGMERGDLLGAN 111          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_LEPBP (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=mdh PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K V +AV+GAAG I   LLF++A+G++ GPD  + L+LL  E+++ A +GV MEL+D  FPLL +V +  N  E F D  WALL+G+ PR  GMER  LL IN
Sbjct:    3 KKVKVAVTGAAGQIGYALLFRIASGQMFGPDTAVELQLLELEQAIPAAKGVIMELDDCAFPLLEKVSVSSNIDEAFRDINWALLVGSVPRKAGMERGDLLKIN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_LEPBA (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=mdh PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K V +AV+GAAG I   LLF++A+G++ GPD  + L+LL  E+++ A +GV MEL+D  FPLL +V +  N  E F D  WALL+G+ PR  GMER  LL IN
Sbjct:    3 KKVKVAVTGAAGQIGYALLFRIASGQMFGPDTAVELQLLELEQAIPAAKGVIMELDDCAFPLLEKVSVSSNIDEAFRDINWALLVGSVPRKAGMERGDLLKIN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_JANMA (Malate dehydrogenase OS=Janthinobacterium sp. (strain Marseille) GN=mdh PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 54/106 (50.94%), Postives = 75/106 (70.75%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL--GSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +AV+GAAG I   LLF++A G++LG DQP+ L+LL    E++ +AL+GV ME++D  FPLL  V    +P   F+DA+ ALL+GA+PRGPGMER  LL+ N
Sbjct:    3 KAPMRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIADEKAQKALKGVIMEIDDCAFPLLAGVTAHSDPMTAFKDADVALLVGARPRGPGMERKDLLEAN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_AZOSB (Malate dehydrogenase OS=Azoarcus sp. (strain BH72) GN=mdh PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL   ++ +A++GV MELED  FPLL  +    +P   F+DA+ ALL+GA+PRGPGMER  LL  N
Sbjct:    3 KAPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLDLPQAQKAVKGVMMELEDCAFPLLAGMIATDDPNVAFKDAKVALLVGARPRGPGMERKDLLTEN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH2_BURTA (Malate dehydrogenase 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.391e-22
Identity = 51/99 (51.52%), Postives = 73/99 (73.74%), Query Frame = 1
Query:  412 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            IAVSGAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL+E+++  +P+  F +A++A L+G+KPR  GMER  LL  N
Sbjct:    8 IAVSGAAGQIAYSLLFRIAQGDLLGEDQPVILQLLDLPQAYGAVQGVVMELQDCAFPLLKEIQVATDPHAAFLNADYAFLVGSKPRTKGMERRDLLAEN 106          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_RALSO2.197e-2251.89Malate dehydrogenase OS=Ralstonia solanacearum GN=... [more]
MDH_PSYA22.197e-2250.94Malate dehydrogenase OS=Psychrobacter arcticus (st... [more]
MDH_DEIRA2.197e-2252.88Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]
MDH_DEIDV2.197e-2251.92Malate dehydrogenase OS=Deinococcus deserti (strai... [more]
MDH_DEIGD3.747e-2251.92Malate dehydrogenase OS=Deinococcus geothermalis (... [more]
MDH_LEPBP4.893e-2250.49Malate dehydrogenase OS=Leptospira biflexa serovar... [more]
MDH_LEPBA4.893e-2250.49Malate dehydrogenase OS=Leptospira biflexa serovar... [more]
MDH_JANMA4.893e-2250.94Malate dehydrogenase OS=Janthinobacterium sp. (str... [more]
MDH_AZOSB4.893e-2252.88Malate dehydrogenase OS=Azoarcus sp. (strain BH72)... [more]
MDH2_BURTA6.391e-2251.52Malate dehydrogenase 2 OS=Burkholderia thailandens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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