CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_MAGSM (Malate dehydrogenase OS=Magnetococcus sp. (strain MC-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.172e-21
Identity = 48/101 (47.52%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + +AV+GAAG IA  LL +LA+G++ G D+ + LKLL   +++  LEGV MEL+D  FP L +V+   NP + F+   W L++G++PRGPGMER+ L+ IN
Sbjct:    5 IRVAVTGAAGQIAYSLLVRLASGQLFGKDRKVELKLLEIPQAMGPLEGVMMELQDCAFPTLAKVEAFDNPEQAFDGINWCLMVGSRPRGPGMERSDLIKIN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_NOCSJ (Malate dehydrogenase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.142e-21
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + +AV+GAAG I   LLF+LA+G +LG D+PI L+LL    +L+ALEGV MEL+D  FP L  V+IG +  ++F+    ALL+GA+PRGPGMER  LL  N
Sbjct:    6 LKVAVTGAAGQIGYSLLFRLASGSLLG-DRPIELRLLEITPALKALEGVVMELDDCAFPNLAGVQIGDDAEQIFDGVNLALLVGARPRGPGMERGDLLSAN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_XYLFA (Malate dehydrogenase OS=Xylella fastidiosa GN=mdh PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLL 699
            K +V +AV+GAAG I   LLF++AAGE+ G D+P+ L++L    E++  AL+GV MELED  FPLL  +    NP   F+DA+ ALL+G++PRGPGMER  LL
Sbjct:    2 KSLVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVGTDNPDIAFKDADVALLVGSRPRGPGMERKDLL 104          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_RALME (Malate dehydrogenase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +AV+GAAG I   LLF++A G++LG DQP+ L+LL   ++  A++GV MELED  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL+ N
Sbjct:    3 KAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_RALEJ (Malate dehydrogenase OS=Ralstonia eutropha (strain JMP134) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +AV+GAAG I   LLF++A G++LG DQP+ L+LL   ++  A++GV MELED  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL+ N
Sbjct:    3 KAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_POLSQ (Malate dehydrogenase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +AV+GAAG I   LLF++A G++LG DQP+ L+LL    E++ +AL GV MELED  FPLL  +    +P   F+D + ALL+GA+PRGPGMER  LL  N
Sbjct:    3 KAPMRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIPDEKAQKALTGVMMELEDCAFPLLAGMTAHSDPMTAFKDIDVALLVGARPRGPGMERKDLLSAN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_POLNS (Malate dehydrogenase OS=Polynucleobacter necessarius (strain STIR1) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +AV+GAAG I   LLF++A G++LG DQP+ L+LL    E++ +AL GV MELED  FPLL  +    +P   F+D + ALL+GA+PRGPGMER  LL  N
Sbjct:    3 KAPMRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIPDEKAQKALAGVMMELEDCAFPLLAGMTAHSDPMTAFKDIDVALLVGARPRGPGMERKDLLSAN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_COXBU (Malate dehydrogenase OS=Coxiella burnetii GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 54/103 (52.43%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K V +AV+GAAG I   LLF+LA+G+  G D  + L LL  E +L AL+GV MELED  FPLLR + +  +P   F D  WALL+GA PR  GMER  LL+ N
Sbjct:    3 KHVKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAFPLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_COXBR (Malate dehydrogenase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 54/103 (52.43%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K V +AV+GAAG I   LLF+LA+G+  G D  + L LL  E +L AL+GV MELED  FPLLR + +  +P   F D  WALL+GA PR  GMER  LL+ N
Sbjct:    3 KHVKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAFPLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_COXB2 (Malate dehydrogenase OS=Coxiella burnetii (strain CbuG_Q212) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 54/103 (52.43%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K V +AV+GAAG I   LLF+LA+G+  G D  + L LL  E +L AL+GV MELED  FPLLR + +  +P   F D  WALL+GA PR  GMER  LL+ N
Sbjct:    3 KHVKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAFPLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKN 105          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_MAGSM3.172e-2147.52Malate dehydrogenase OS=Magnetococcus sp. (strain ... [more]
MDH_NOCSJ4.142e-2153.47Malate dehydrogenase OS=Nocardioides sp. (strain B... [more]
MDH_XYLFA5.410e-2152.43Malate dehydrogenase OS=Xylella fastidiosa GN=mdh ... [more]
MDH_RALME5.410e-2150.96Malate dehydrogenase OS=Ralstonia metallidurans (s... [more]
MDH_RALEJ5.410e-2150.96Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]
MDH_POLSQ5.410e-2150.94Malate dehydrogenase OS=Polynucleobacter sp. (stra... [more]
MDH_POLNS5.410e-2150.94Malate dehydrogenase OS=Polynucleobacter necessari... [more]
MDH_COXBU5.410e-2152.43Malate dehydrogenase OS=Coxiella burnetii GN=mdh P... [more]
MDH_COXBR5.410e-2152.43Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_COXB25.410e-2152.43Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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