CN188551

Overview
NameCN188551
Unique NameCN188551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3947 contig Csv1_Contig3947:42..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_COXB1 (Malate dehydrogenase OS=Coxiella burnetii (strain CbuK_Q154) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 54/103 (52.43%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K V +AV+GAAG I   LLF+LA+G+  G D  + L LL  E +L AL+GV MELED  FPLLR + +  +P   F D  WALL+GA PR  GMER  LL+ N
Sbjct:    3 KHVKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAFPLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH2_BURVG (Malate dehydrogenase 2 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MELED  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_XYLFM (Malate dehydrogenase OS=Xylella fastidiosa (strain M12) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLL 699
            K +V +AV+GAAG I   LLF++AAGE+ G D+ + L++L    E++  AL+GV MELED  FPLL  + +  NP   F+DA+ ALL+G++PRGPGMER  LL
Sbjct:    2 KALVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRSVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVVTDNPDIAFKDADAALLVGSRPRGPGMERKDLL 104          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            VN+ V+GAAG I   LLF++A+G +LGPD P+ L+LL   + L+A EG AMEL+D  FPLLR ++I  +P   F  A  ALL+GA+PR  GMER  LL  N
Sbjct:    6 VNVTVTGAAGQIGYALLFRIASGHLLGPDVPVNLRLLEIPQGLKAAEGTAMELDDCAFPLLRGIEITDDPNVGFAGANVALLVGARPRTKGMERGDLLAAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_RHOSR (Malate dehydrogenase OS=Rhodococcus sp. (strain RHA1) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 51/99 (51.52%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  412 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + V+GAAG I    LF++AAGE+LGPD PI L+LL    ++ A EG AMEL+DS FPLLR++++  +P   F+  + ALLIG++PR  GMER  LL  N
Sbjct:   10 VTVTGAAGSIGYASLFRIAAGEMLGPDTPIRLRLLEIPSAVSAAEGTAMELDDSAFPLLRDIEVHDDPKRGFDGTDVALLIGSRPRSKGMERGDLLAAN 108          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_NOCFA (Malate dehydrogenase OS=Nocardia farcinica GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            V + V+GAAG IA  LLF++A+G +LGP  PI L+LL    ++ +LEGVAMELED  FPLL  + I  +P+  F  A  ALL+GA+PR  GMERA LL  N
Sbjct:   10 VTVTVTGAAGQIAYGLLFRIASGAMLGPHTPIRLRLLEIPAAVASLEGVAMELEDGAFPLLDAIDISDDPWTGFAGANVALLVGARPRTAGMERADLLAAN 110          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_NITEU (Malate dehydrogenase OS=Nitrosomonas europaea GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 50/101 (49.50%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            + IAV+GAAG I+  LLF++AAG++LG  QP+ L+LL    S + L+GV MEL+D  FPLL ++ +  +P   F+ A+ A+L+GA+PRG GMER  LL  N
Sbjct:    5 IRIAVTGAAGQISYSLLFRIAAGDMLGSSQPVILQLLDIPESGKVLDGVLMELQDCAFPLLTDIIVTHDPMIAFDQADIAILVGARPRGKGMERKDLLQTN 105          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_DECAR (Malate dehydrogenase OS=Dechloromonas aromatica (strain RCB) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K  + +A++GAAG I   LLF++A+GE+LG DQP+ L+LL   ++ QA++GV MELED  FPLL  +    +P   F+DA+  LL+GA+PR  GMERA LL  N
Sbjct:    3 KAPMRVAITGAAGQIGYSLLFRIASGEMLGKDQPVILQLLDLPQAQQAVKGVMMELEDCAFPLLAGMVATDDPNVAFKDADVCLLVGARPRTKGMERADLLTAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_STRCO (Malate dehydrogenase OS=Streptomyces coelicolor GN=mdh PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            VN+ V+GAAG I   LLF++A+G++LG D P+ L+LL    +L+A EG AMEL+D  FPLL+ ++I  +P   F+ A  ALL+GA+PR  GMER  LL+ N
Sbjct:    6 VNVTVTGAAGQIGYALLFRIASGQLLGADVPVKLRLLEITPALKAAEGTAMELDDCAFPLLQGIEITDDPNVAFDGANVALLVGARPRTKGMERGDLLEAN 106          
BLAST of CN188551 vs. ExPASy Swiss-Prot
Match: MDH_BURPS (Malate dehydrogenase OS=Burkholderia pseudomallei GN=mdh PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN 708
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A++GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSAN 106          
The following BLAST results are available for this feature:
BLAST of CN188551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_COXB15.410e-2152.43Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH2_BURVG5.410e-2151.92Malate dehydrogenase 2 OS=Burkholderia vietnamiens... [more]
MDH_XYLFM9.228e-2151.46Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_STRGG9.228e-2152.48Malate dehydrogenase OS=Streptomyces griseus subsp... [more]
MDH_RHOSR9.228e-2151.52Malate dehydrogenase OS=Rhodococcus sp. (strain RH... [more]
MDH_NOCFA9.228e-2153.47Malate dehydrogenase OS=Nocardia farcinica GN=mdh ... [more]
MDH_NITEU9.228e-2149.50Malate dehydrogenase OS=Nitrosomonas europaea GN=m... [more]
MDH_DECAR9.228e-2150.00Malate dehydrogenase OS=Dechloromonas aromatica (s... [more]
MDH_STRCO1.205e-2050.50Malate dehydrogenase OS=Streptomyces coelicolor GN... [more]
MDH_BURPS1.205e-2050.96Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188551 ID=CN188551; Name=CN188551; organism=Citrus sinensis; type=EST; length=709bp
GCGTTCCTTCCGAATCTTTCTCTCAAGACAAGACTTTTTAGCTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTGAAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAG
ATATCAATG
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