CN188548

Overview
NameCN188548
Unique NameCN188548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188548 vs. ExPASy Swiss-Prot
Match: RK14_CRYJA (50S ribosomal protein L14, chloroplastic OS=Cryptomeria japonica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 38/119 (31.93%), Postives = 71/119 (59.66%), Query Frame = -1 
Query:  165 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 509
            +N ADN+GA+ L  I V G   R     +A +GD+++A +K+  P++     +V+ AV++R  K  +R DG+ +  +DNA V+++ KG  +G+ + G + +E  +L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVLGAGNR----NTANIGDIIIAIIKEAAPNMPLEESEVVRAVVIRTCKELKRSDGMIIRSDDNAAVVIDQKGNPRGTRVFGSVTEELRELNFTKIISLAPEVL 122
The following BLAST results are available for this feature:
BLAST of CN188548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
RK14_CRYJA8.658e-1131.9350S ribosomal protein L14, chloroplastic OS=Crypto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188548 ID=CN188548; Name=CN188548; organism=Citrus sinensis; type=EST; length=710bp
TTTCAGATCACAAACTCCAACTTTCTACCACTTACAAAACTACCCTTCAA
AATCATACAGAAAGTTCACAGAAAAGCTTTACTCCTTCCTACTATGAAAC
TTCACCAGATTTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGG
TCTTGAATGTCTTAAACGATAGCATTGGCTGCACTTGCAATTCTCGGCCA
CAAATCAGCACACTCTTTACCAATTGGACCGGTGATGGCAGAACCCTTCA
TTTCTCCCTTTGGATTCACAATAACACCAGCATTATCTTCAAAGTACATG
AAGACACCATCCTTTCTGCGCCATGGCTTGCGCTGCCTTACAATGACGGC
GGGCATCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACGGTAGCCA
TAACCATGTCTCCAACACAGGCAGACGGCAAACGGTTGAGGCGACCTTTG
ATTCCCTTAACTGAGATGATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGC
ACAGTTCACAGTTGCTGCCACTGGCAAACCCAGTGACATCCTGAACTTGT
TACCTGCTGATCCTCCACGTCCTCGCTTCGACATTTTCGCATTTCAATCA
AATAACTTCTAAAAAAATATTACAACACAAATAAATAGATAAAATATACA
AGATTCATTCAAAAGTTATCTTAGGATGATAGTATAAAAGTTTAAATATA
CTACAATATA
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